Factsheet for Solyc10g005760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022402	Potato	nucleus	93.75	96.04
VIT_19s0015g01280.t01	Wine grape	nucleus	68.15	69.39
CDY64987	Canola	nucleus	49.11	69.04
KRG98401	Soybean	nucleus	65.18	67.18
KRH46482	Soybean	nucleus	63.69	65.85
TraesCS2D01G331700.1	Wheat	nucleus	60.42	57.67
TraesCS2B01G351000.1	Wheat	nucleus	60.42	57.67
AT5G56110.1	Thale cress	nucleus	54.76	57.5
TraesCS2A01G331200.1	Wheat	nucleus	60.12	57.39
Bra035604.1-P	Field mustard	nucleus	53.87	56.56
Bra002847.1-P	Field mustard	nucleus	53.57	56.25
CDY17391	Canola	nucleus	53.57	56.25
CDY57424	Canola	nucleus	53.57	56.25
Zm00001d025664_P001	Maize	nucleus	56.85	53.65
EES12341	Sorghum	nucleus	57.74	52.29
HORVU2Hr1G081720.2	Barley	nucleus	46.43	50.0
Solyc03g059200.1.1	Tomato	nucleus	32.14	41.06
Solyc08g065910.1.1	Tomato	nucleus	24.11	38.03
Solyc09g008250.2.1	Tomato	nucleus	27.68	31.42
Solyc12g008670.1.1	Tomato	nucleus	25.89	30.85
Solyc04g077260.2.1	Tomato	nucleus	27.98	28.92
Solyc06g074910.2.1	Tomato	nucleus	25.0	27.81
Solyc11g069030.1.1	Tomato	nucleus	25.3	26.98
Solyc02g091980.1.1	Tomato	nucleus	26.49	26.97
Solyc06g074920.1.1	Tomato	nucleus	21.73	24.75
Solyc03g113530.2.1	Tomato	nucleus	24.11	22.82
Solyc07g006750.2.1	Tomato	mitochondrion	26.49	20.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:21.8.1.1	ncoils:Coil	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4CXA8	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g005760.1
EnsemblPlants:Solyc10g005760.1.1	UniParc:UPI000276C973	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:612159..614054

Molecular Weight (calculated)

37728.1 Da

IEP (calculated)

7.808

GRAVY (calculated)

-0.832

Length

336 amino acids

Sequence
(BLAST)

001: MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLPGRT
101: DNDVKNHWNT KLKKKLSGMG IDPVTHKPFS HLISEIATTL SPPQVPHLAE AALGCFKDEM LHLLTKKRIG FQFHTQFTNM TSTHNNAPST SHVKHEENNN
201: YKDNNTIEKI KYGLSRAIKE SDKNWETSVG GTTSSNFHDN GGFSNYNFAN LLNDEDGSPW NQSLCSGSTC TAGGGGGELQ QQQQQQQQQN KKISNDNCED
301: SGKEIVVTTR NGSTTMFNTD CVLWDISSDD LMNPMV

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.