Factsheet for Solyc04g077260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g026190.2.1
Solyc08g006620.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49690.1	Solyc08g006620.2.1	AT2G24860.1	21798944
AT3G49690.1	Solyc03g026190.2.1	AT5G62090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012702	Potato	nucleus	94.77	93.62
CDY08749	Canola	nucleus	12.92	82.35
HORVU5Hr1G098540.1	Barley	nucleus	48.0	50.16
GSMUA_Achr5P21840_001	Banana	nucleus	31.69	49.76
GSMUA_Achr4P28090_001	Banana	nucleus	34.46	49.56
Zm00001d034207_P001	Maize	nucleus	47.08	48.73
Os03t0771100-01	Rice	nucleus	48.0	48.6
TraesCS5D01G415800.1	Wheat	nucleus	46.46	48.55
TraesCS5B01G410500.1	Wheat	nucleus	46.46	48.55
TraesCS5A01G405800.1	Wheat	nucleus	46.15	48.23
EER90818	Sorghum	nucleus	47.69	47.4
GSMUA_Achr10P...	Banana	nucleus	39.08	47.39
Zm00001d013164_P002	Maize	nucleus	47.38	44.0
GSMUA_Achr5P01930_001	Banana	nucleus	37.54	43.42
Solyc08g065910.1.1	Tomato	nucleus	28.31	43.19
GSMUA_Achr4P32240_001	Banana	nucleus	35.69	41.58
CDY08162	Canola	nucleus	37.54	40.67
Bra017963.1-P	Field mustard	nucleus	37.23	40.33
AT3G49690.1	Thale cress	nucleus	38.46	40.32
GSMUA_Achr7P08150_001	Banana	nucleus	31.69	40.23
CDY18676	Canola	nucleus	38.46	39.81
CDY65680	Canola	nucleus	36.62	39.67
CDY60980	Canola	nucleus	38.15	39.49
Solyc09g008250.2.1	Tomato	nucleus	35.69	39.19
Bra037828.1-P	Field mustard	nucleus	37.54	38.85
Solyc06g074910.2.1	Tomato	nucleus	36.0	38.74
Solyc02g091980.1.1	Tomato	nucleus	39.08	38.48
KRH77168	Soybean	nucleus	40.62	38.04
KRH28317	Soybean	nucleus	40.62	37.93
GSMUA_Achr6P31740_001	Banana	nucleus	38.15	37.01
Solyc11g069030.1.1	Tomato	nucleus	34.77	35.87
CDY45629	Canola	nucleus	40.0	35.33
Bra024419.1-P	Field mustard	nucleus	40.0	35.33
GSMUA_Achr6P01850_001	Banana	nucleus	36.0	35.14
Solyc12g008670.1.1	Tomato	nucleus	30.46	35.11
CDY08748	Canola	nucleus	39.69	35.05
Solyc06g074920.1.1	Tomato	nucleus	31.69	34.92
AT5G65790.1	Thale cress	nucleus	39.69	34.49
CDY52538	Canola	nucleus	38.77	34.15
CDY37840	Canola	nucleus	38.77	33.96
Bra031847.1-P	Field mustard	nucleus	38.77	33.96
Solyc03g059200.1.1	Tomato	nucleus	27.08	33.46
Solyc07g006750.2.1	Tomato	mitochondrion	39.69	30.42
Solyc10g005760.1.1	Tomato	nucleus	28.92	27.98
Solyc03g113530.2.1	Tomato	nucleus	22.15	20.28

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BUG3	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF928
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g077260.2	EnsemblPlants:Solyc04g077260.2.1	UniParc:UPI0002766265
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:62235761..62237526

Molecular Weight (calculated)

36929.7 Da

IEP (calculated)

7.830

GRAVY (calculated)

-0.722

Length

325 amino acids

Sequence
(BLAST)

001: MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLFGK QRQKQGSRKG KEINSISSIS NSINNMNQNP CWPEPLIMQQ PIQFSNNDHT SIRKLLIKLG GKFSENDQLT NVVSPNSQHP
201: IDNSSMQLMY QNHINLISSS PIDNVFNNMS TAPLYNMDGE ASNFTAEFEH MINNHQQKLD GLEFLYEDNV FIDKSASTSG GNLDWESMNP YVLPFPPIVD
301: GGNFQQGVIL QEGTLDDELR YPREQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.