Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49690.1 | CDY36149 | AT2G24860.1 | 21798944 |
| AT3G49690.1 | CDY45605 | AT2G24860.1 | 21798944 |
| AT3G49690.1 | CDY30691 | AT5G62090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017963.1-P | Field mustard | nucleus | 99.67 | 99.67 |
| CDY65680 | Canola | nucleus | 91.0 | 91.0 |
| CDY08749 | Canola | nucleus | 14.33 | 84.31 |
| AT3G49690.1 | Thale cress | nucleus | 83.33 | 80.65 |
| CDY18676 | Canola | nucleus | 64.67 | 61.78 |
| CDY60980 | Canola | nucleus | 64.0 | 61.15 |
| CDY37840 | Canola | nucleus | 71.0 | 57.41 |
| CDY52538 | Canola | nucleus | 70.33 | 57.18 |
| CDY45629 | Canola | nucleus | 69.67 | 56.79 |
| CDY08748 | Canola | nucleus | 69.67 | 56.79 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 38.0 | 50.44 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 34.0 | 49.28 |
| GSMUA_Achr10P... | Banana | nucleus | 36.67 | 41.04 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 34.67 | 40.62 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 37.67 | 40.21 |
| CDY33205 | Canola | nucleus | 37.0 | 38.54 |
| CDX75005 | Canola | nucleus | 36.67 | 38.19 |
| KRH28317 | Soybean | nucleus | 44.0 | 37.93 |
| KRH77168 | Soybean | nucleus | 43.67 | 37.75 |
| CDY46743 | Canola | nucleus | 36.33 | 37.72 |
| CDX69328 | Canola | nucleus | 38.33 | 37.7 |
| Solyc04g077260.2.1 | Tomato | nucleus | 40.67 | 37.54 |
| PGSC0003DMT400012702 | Potato | nucleus | 41.0 | 37.39 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 34.67 | 37.28 |
| CDX79698 | Canola | nucleus | 35.33 | 36.68 |
| CDY25898 | Canola | nucleus | 39.0 | 36.11 |
| CDY11860 | Canola | nucleus | 39.33 | 35.33 |
| CDX88631 | Canola | nucleus | 38.67 | 35.05 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 39.0 | 34.93 |
| CDY64987 | Canola | nucleus | 27.33 | 34.31 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 37.67 | 33.93 |
| CDY09184 | Canola | nucleus | 33.67 | 30.7 |
| CDY50326 | Canola | nucleus | 34.0 | 30.54 |
| CDY26977 | Canola | nucleus | 34.0 | 30.0 |
| CDY17391 | Canola | nucleus | 28.33 | 26.56 |
| CDY57424 | Canola | nucleus | 27.67 | 25.94 |
| CDX86430 | Canola | nucleus | 26.67 | 24.77 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 26.67 | 12.23 |
| CDY40299 | Canola | nucleus | 3.0 | 4.5 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078F4Y6 | UniProt:A0A078F4Y6 | EnsemblPlants:CDY08162 | ProteinID:CDY08162 |
| ProteinID:CDY08162.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00125457001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF654 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED4D1 | : |
Description
BnaA06g15640DBnaA06g15640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4Y6]
Coordinates
chrLK031983:+:763404..764624
Molecular Weight (calculated)
34537.1 Da
IEP (calculated)
8.004
GRAVY (calculated)
-0.738
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE TRGTGGNWIA LPHKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEDEESIIC NLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLIMK QRKDLQEACI EQQEMMVMMK RQQQQIQTSF MMRQDQTMFT WPPQQLPFLH HNDDQVPTLV MNSSGGQEDS KPEIIKNMVK
201: IEDQEPERTN AFDHLNISQL LLDPNNNYLG SGEGFSMNSI LSTNTNSPLR NTSISHQRFR NFHDEAVDLF LGETSTSADQ STIRWEDISS LVYSDSKKCC
101: TDNDIKNYWN TRLKKKLIMK QRKDLQEACI EQQEMMVMMK RQQQQIQTSF MMRQDQTMFT WPPQQLPFLH HNDDQVPTLV MNSSGGQEDS KPEIIKNMVK
201: IEDQEPERTN AFDHLNISQL LLDPNNNYLG SGEGFSMNSI LSTNTNSPLR NTSISHQRFR NFHDEAVDLF LGETSTSADQ STIRWEDISS LVYSDSKKCC
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
Arabidopsis Description
RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.