Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031847.1-P | Field mustard | nucleus | 97.56 | 97.03 |
| CDY37840 | Canola | nucleus | 97.29 | 96.77 |
| CDY08749 | Canola | nucleus | 12.2 | 88.24 |
| CDY45629 | Canola | nucleus | 87.53 | 87.77 |
| CDY08748 | Canola | nucleus | 86.99 | 87.23 |
| AT5G65790.1 | Thale cress | nucleus | 87.8 | 86.63 |
| CDY18676 | Canola | nucleus | 72.36 | 85.03 |
| CDY60980 | Canola | nucleus | 71.82 | 84.39 |
| CDY08162 | Canola | nucleus | 57.18 | 70.33 |
| CDY65680 | Canola | nucleus | 56.64 | 69.67 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 31.44 | 51.33 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 28.46 | 50.72 |
| GSMUA_Achr10P... | Banana | nucleus | 31.44 | 43.28 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 29.27 | 42.19 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 31.71 | 41.64 |
| KRH77168 | Soybean | nucleus | 38.75 | 41.21 |
| KRH28317 | Soybean | nucleus | 38.75 | 41.09 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 30.62 | 40.5 |
| CDX69328 | Canola | nucleus | 33.33 | 40.33 |
| CDY33205 | Canola | nucleus | 31.44 | 40.28 |
| CDX75005 | Canola | nucleus | 31.44 | 40.28 |
| CDX79698 | Canola | nucleus | 30.89 | 39.45 |
| CDY46743 | Canola | nucleus | 30.89 | 39.45 |
| Solyc04g077260.2.1 | Tomato | nucleus | 34.15 | 38.77 |
| PGSC0003DMT400012702 | Potato | nucleus | 34.42 | 38.6 |
| CDY11860 | Canola | nucleus | 33.88 | 37.43 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 33.6 | 37.24 |
| CDX88631 | Canola | nucleus | 33.33 | 37.16 |
| CDY25898 | Canola | nucleus | 32.52 | 37.04 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 33.06 | 36.42 |
| CDY64987 | Canola | nucleus | 22.22 | 34.31 |
| CDY09184 | Canola | nucleus | 28.46 | 31.91 |
| CDY50326 | Canola | nucleus | 28.46 | 31.44 |
| CDY26977 | Canola | nucleus | 28.46 | 30.88 |
| CDY17391 | Canola | nucleus | 23.58 | 27.19 |
| CDY57424 | Canola | nucleus | 23.04 | 26.56 |
| CDX86430 | Canola | nucleus | 22.76 | 26.01 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 22.76 | 12.84 |
| CDY40299 | Canola | nucleus | 2.98 | 5.5 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IU66 | UniProt:A0A078IU66 | EnsemblPlants:CDY52538 | ProteinID:CDY52538 |
| ProteinID:CDY52538.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00007238001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF654 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDFA16 | SEG:seg |
Description
BnaC02g43910DBnaC02g43910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU66]
Coordinates
chrLK033101:+:55042..56671
Molecular Weight (calculated)
41422.4 Da
IEP (calculated)
5.644
GRAVY (calculated)
-0.742
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE SSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQCQSNGS TDLYLNNMFG SSPWPLLPQL PPPHCQVPLV MMEPTSCNYY QPTPSCALEQ
201: KPLIPLKNMV KIEEEPERSN PDHHYPEDSM TNSYDLSFSQ LLLDPNYYLE SGGGEGEFAL MSSSTNSPLP NTSGDHHQHQ KEITQWFGSS NFQTEAINDV
301: FLNNNNLANF ETNDENAKLY ANSSVTGAGA AFAGGTTSTS ADQSTISWED ITSLVNSDDA SYFNGPNHV
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQCQSNGS TDLYLNNMFG SSPWPLLPQL PPPHCQVPLV MMEPTSCNYY QPTPSCALEQ
201: KPLIPLKNMV KIEEEPERSN PDHHYPEDSM TNSYDLSFSQ LLLDPNYYLE SGGGEGEFAL MSSSTNSPLP NTSGDHHQHQ KEITQWFGSS NFQTEAINDV
301: FLNNNNLANF ETNDENAKLY ANSSVTGAGA AFAGGTTSTS ADQSTISWED ITSLVNSDDA SYFNGPNHV
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
Arabidopsis Description
ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.