CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002448.1-P	Field mustard	nucleus	95.0	96.71
CDY50326	Canola	nucleus	94.71	96.41
CDY09184	Canola	nucleus	81.47	84.19
AT5G23000.1	Thale cress	nucleus	77.06	79.64
CDY40299	Canola	nucleus	45.59	77.5
CDY08749	Canola	nucleus	10.29	68.63
CDX75005	Canola	nucleus	31.76	37.5
CDY33205	Canola	nucleus	31.76	37.5
CDX79698	Canola	nucleus	31.18	36.68
CDY46743	Canola	nucleus	30.88	36.33
CDY25898	Canola	nucleus	33.24	34.88
CDY08162	Canola	nucleus	30.0	34.0
CDY64987	Canola	nucleus	23.82	33.89
CDX88631	Canola	nucleus	32.94	33.84
CDY11860	Canola	nucleus	32.94	33.53
CDX69328	Canola	nucleus	29.71	33.11
CDY18676	Canola	nucleus	30.0	32.48
CDY65680	Canola	nucleus	28.53	32.33
CDY60980	Canola	nucleus	29.71	32.17
CDY52538	Canola	nucleus	30.88	28.46
CDY37840	Canola	nucleus	30.88	28.3
CDY45629	Canola	nucleus	30.59	28.26
CDY08748	Canola	nucleus	30.59	28.26
CDY17391	Canola	nucleus	24.41	25.94
CDY57424	Canola	nucleus	24.12	25.62
CDX86430	Canola	nucleus	23.82	25.08
CDX85201	Canola	endoplasmic reticulum, vacuole	23.53	12.23

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078GP72	UniProt:A0A078GP72	EnsemblPlants:CDY26977	ProteinID:CDY26977
ProteinID:CDY26977.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00036744001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF928	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EECDE7	SEG:seg

Description

BnaC09g36060DBnaC09g36060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP72]

Coordinates

chrLK032197:+:471883..473605

Molecular Weight (calculated)

37993.1 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.708

Length

340 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDAKLRDYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLQGR
101: TDNDIKNYWN TKLRKKIMSS SSSSSSSHSS AAMATPFLNP NSHDVKRPIT PSATIAPFSY NPYVENSTRS LISNINGFEA DDQQIFPFFN PNYPHEFSLE
201: DMSSSNNNNN ISGTSGFLLN HSMCDHYSNH NNFSSEVNGK RSEIMMEQEE MMMIDHHIDQ MTEGYNGDFT QGYYNNDING HGDLKRMISG TGTNSNINMG
301: GSGSGSGSGT ASSSRFISNL AENKTSSSLL QHTCLPYFYS

Best Arabidopsis Sequence Match ( AT5G23000.1 )
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS

Arabidopsis Description

RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.