CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26800702

gfp PMID: 26800702 doi

B Chen, F Niu, WZ Liu, B Yang, J Zhang, J Ma, H Cheng, F Han, YQ Jiang

State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005234.1-P	Field mustard	nucleus	100.0	100.0
CDY33205	Canola	nucleus	95.83	95.83
CDY46743	Canola	nucleus	84.72	84.43
CDX79698	Canola	nucleus	84.38	84.08
CDY08749	Canola	nucleus	13.89	78.43
AT2G36890.2	Thale cress	nucleus	86.46	73.45
CDY08162	Canola	nucleus	38.19	36.67
CDY60980	Canola	nucleus	38.89	35.67
CDY18676	Canola	nucleus	38.54	35.35
CDX88631	Canola	nucleus	39.58	34.44
CDX69328	Canola	nucleus	36.46	34.43
CDY11860	Canola	nucleus	39.58	34.13
CDY65680	Canola	nucleus	35.42	34.0
CDY25898	Canola	nucleus	38.19	33.95
CDY64987	Canola	nucleus	28.12	33.89
CDY09184	Canola	nucleus	36.81	32.22
CDY26977	Canola	nucleus	37.5	31.76
CDY50326	Canola	nucleus	36.81	31.74
CDY45629	Canola	nucleus	40.28	31.52
CDY08748	Canola	nucleus	40.28	31.52
CDY52538	Canola	nucleus	40.28	31.44
CDY37840	Canola	nucleus	39.58	30.73
CDY57424	Canola	nucleus	29.17	26.25
CDY17391	Canola	nucleus	29.17	26.25
CDX86430	Canola	nucleus	28.82	25.7
CDX85201	Canola	endoplasmic reticulum, vacuole	28.82	12.69
CDY40299	Canola	nucleus	2.08	3.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078CDQ5	UniProt:A0A078CDQ5	EnsemblPlants:CDX75005	ProteinID:CDX75005
ProteinID:CDX75005.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00117026001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002547AA0	SEG:seg

Description

BnaA05g07510DBnaA05g07510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CDQ5]

Coordinates

chrLK031802:-:1895943..1897453

Molecular Weight (calculated)

32807.6 Da

IEP (calculated)

7.034

GRAVY (calculated)

-0.775

Length

288 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FSEEEDKIIF SLFSSIGSRW SVIAAHLHGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPPHHLL AIASSSSSPS SSHYNMTNSL PPYNPSISTN ELLTPHQEMM MTMMDQQQQQ LLYQEAVDSL VNSPNSNKLI
201: MSHQEDSREQ STNKGIMLLS DVRSGSSTTS TVTRVKMEQH DHHHEERSME DYGMEEINHL INSSCTSSSS NSLWFDENKT DDTFMLYY

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.