CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28090_001	Banana	nucleus	82.35	18.58
GSMUA_Achr5P21840_001	Banana	nucleus	66.67	16.43
CDY18676	Canola	nucleus	90.2	14.65
GSMUA_Achr5P01930_001	Banana	nucleus	80.39	14.59
GSMUA_Achr10P...	Banana	nucleus	76.47	14.55
GSMUA_Achr7P08150_001	Banana	nucleus	72.55	14.45
CDY08162	Canola	nucleus	84.31	14.33
CDY60980	Canola	nucleus	88.24	14.33
CDY65680	Canola	nucleus	82.35	14.0
CDY33205	Canola	nucleus	78.43	13.89
CDX75005	Canola	nucleus	78.43	13.89
CDX79698	Canola	nucleus	74.51	13.15
CDY46743	Canola	nucleus	74.51	13.15
CDY25898	Canola	nucleus	82.35	12.96
Solyc04g077260.2.1	Tomato	nucleus	82.35	12.92
GSMUA_Achr4P32240_001	Banana	nucleus	70.59	12.9
CDY45629	Canola	nucleus	92.16	12.77
Bra024419.1-P	Field mustard	nucleus	92.16	12.77
PGSC0003DMT400012702	Potato	nucleus	82.35	12.77
KRH77168	Soybean	nucleus	86.27	12.68
KRH28317	Soybean	nucleus	86.27	12.64
GSMUA_Achr6P01850_001	Banana	nucleus	82.35	12.61
CDY11860	Canola	nucleus	82.35	12.57
CDX69328	Canola	nucleus	74.51	12.46
CDX88631	Canola	nucleus	80.39	12.39
AT5G65790.1	Thale cress	nucleus	90.2	12.3
CDY08748	Canola	nucleus	88.24	12.23
CDY52538	Canola	nucleus	88.24	12.2
CDY37840	Canola	nucleus	88.24	12.13
GSMUA_Achr6P31740_001	Banana	nucleus	78.43	11.94
CDY50326	Canola	nucleus	68.63	10.48
CDY64987	Canola	nucleus	49.02	10.46
CDY26977	Canola	nucleus	68.63	10.29
CDY09184	Canola	nucleus	62.75	9.73
CDX86430	Canola	nucleus	54.9	8.67
CDY17391	Canola	nucleus	49.02	7.81
CDY57424	Canola	nucleus	47.06	7.5
CDX85201	Canola	endoplasmic reticulum, vacuole	54.9	4.28
CDY40299	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY08749	EnsemblPlantsGene:GSBRNA2T00000679001	Gene3D:1.10.10.60	GO:A0A078F6S5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	PFAM:PF00249	ProteinID:CDY08749	ProteinID:CDY08749.1	SUPFAM:SSF46689	UniParc:UPI0004EE50C1
UniProt:A0A078F6S5	MapMan:35.1	:	:	:	:

Description

BnaA06g24750DBnaA06g24750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6S5]

Coordinates

chrLK031989:-:164540..166731

Molecular Weight (calculated)

5672.8 Da

IEP (calculated)

8.756

GRAVY (calculated)

-1.069

Length

51 amino acids

Sequence
(BLAST)

1: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NNGTGGNWIA LPQKIVEKDK K

Best Arabidopsis Sequence Match ( AT5G65790.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV

Arabidopsis Description

ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.