CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002448.1-P	Field mustard	nucleus	99.7	99.7
CDY26977	Canola	nucleus	96.41	94.71
CDY09184	Canola	nucleus	84.43	85.71
AT5G23000.1	Thale cress	nucleus	80.84	82.07
CDY40299	Canola	nucleus	47.9	80.0
CDY08749	Canola	nucleus	10.48	68.63
CDX75005	Canola	nucleus	31.74	36.81
CDY33205	Canola	nucleus	31.74	36.81
CDX79698	Canola	nucleus	31.74	36.68
CDY46743	Canola	nucleus	31.44	36.33
CDY25898	Canola	nucleus	33.53	34.57
CDY64987	Canola	nucleus	24.55	34.31
CDY08162	Canola	nucleus	30.54	34.0
CDX88631	Canola	nucleus	33.53	33.84
CDY11860	Canola	nucleus	33.53	33.53
CDY18676	Canola	nucleus	30.84	32.8
CDX69328	Canola	nucleus	29.94	32.79
CDY60980	Canola	nucleus	30.54	32.48
CDY65680	Canola	nucleus	29.04	32.33
CDY45629	Canola	nucleus	31.44	28.53
CDY08748	Canola	nucleus	31.44	28.53
CDY52538	Canola	nucleus	31.44	28.46
CDY37840	Canola	nucleus	31.44	28.3
CDY17391	Canola	nucleus	25.15	26.25
CDY57424	Canola	nucleus	24.85	25.94
CDX86430	Canola	nucleus	24.55	25.39
CDX85201	Canola	endoplasmic reticulum, vacuole	24.25	12.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078IK16	UniProt:A0A078IK16	EnsemblPlants:CDY50326	ProteinID:CDY50326
ProteinID:CDY50326.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00096432001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF928	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE804E	SEG:seg

Description

BnaA10g13590DBnaA10g13590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK16]

Coordinates

chrLK032901:-:50411..51945

Molecular Weight (calculated)

37303.5 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.684

Length

334 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDAKLRDYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAVGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKIMSS SSSSSSHSSA AMATPFLNPN SHDVKRPITP SATIAPFSYN PYVENSTTSL ISNINGFEAD DQQIFPFFNP NYPHDFSLED
201: MSSNNNNNIS GTSGFLLNHS MCDHYSNHTN FSSDVNGKRS EIMMKQEEMM MIDHHIDQMT KGYNGDFTQG YYNNDINGHG DLKQMISGTG TNSNINMGGS
301: GSGSASSSSF ISNLAENKTS SSLLKHKCLP YFYS

Best Arabidopsis Sequence Match ( AT5G23000.1 )
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS

Arabidopsis Description

RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.