Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18676 | Canola | nucleus | 96.5 | 96.5 |
| Bra037828.1-P | Field mustard | nucleus | 95.22 | 95.22 |
| CDY08749 | Canola | nucleus | 14.33 | 88.24 |
| AT5G65790.1 | Thale cress | nucleus | 88.22 | 74.06 |
| CDY45629 | Canola | nucleus | 84.71 | 72.28 |
| CDY08748 | Canola | nucleus | 84.39 | 72.01 |
| CDY52538 | Canola | nucleus | 84.39 | 71.82 |
| CDY37840 | Canola | nucleus | 83.76 | 70.89 |
| CDY08162 | Canola | nucleus | 61.15 | 64.0 |
| CDY65680 | Canola | nucleus | 59.87 | 62.67 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 33.12 | 50.24 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 35.67 | 49.56 |
| GSMUA_Achr10P... | Banana | nucleus | 35.35 | 41.42 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 33.76 | 41.41 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 36.62 | 40.93 |
| KRH28317 | Soybean | nucleus | 43.95 | 39.66 |
| KRH77168 | Soybean | nucleus | 43.63 | 39.48 |
| CDY33205 | Canola | nucleus | 35.67 | 38.89 |
| CDX75005 | Canola | nucleus | 35.67 | 38.89 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 34.08 | 38.35 |
| Solyc04g077260.2.1 | Tomato | nucleus | 39.49 | 38.15 |
| CDY46743 | Canola | nucleus | 35.03 | 38.06 |
| CDX79698 | Canola | nucleus | 34.71 | 37.72 |
| PGSC0003DMT400012702 | Potato | nucleus | 39.49 | 37.69 |
| CDX69328 | Canola | nucleus | 36.31 | 37.38 |
| CDY11860 | Canola | nucleus | 37.9 | 35.63 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 37.58 | 35.44 |
| CDX88631 | Canola | nucleus | 37.26 | 35.35 |
| CDY25898 | Canola | nucleus | 36.31 | 35.19 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 36.94 | 34.63 |
| CDY64987 | Canola | nucleus | 25.48 | 33.47 |
| CDY50326 | Canola | nucleus | 32.48 | 30.54 |
| CDY09184 | Canola | nucleus | 31.85 | 30.4 |
| CDY26977 | Canola | nucleus | 32.17 | 29.71 |
| CDY17391 | Canola | nucleus | 26.75 | 26.25 |
| CDY57424 | Canola | nucleus | 26.11 | 25.62 |
| CDX86430 | Canola | nucleus | 26.11 | 25.39 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 26.11 | 12.54 |
| CDY40299 | Canola | nucleus | 1.91 | 3.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078JA03 | UniProt:A0A078JA03 | EnsemblPlants:CDY60980 | ProteinID:CDY60980 |
| ProteinID:CDY60980.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00030357001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF654 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDCBD1 | SEG:seg |
Description
BnaC09g50990DBnaC09g50990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA03]
Coordinates
chrLK033940:+:36219..37645
Molecular Weight (calculated)
35086.8 Da
IEP (calculated)
5.081
GRAVY (calculated)
-0.807
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDTIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRTEFQEARM KQEMVMMKRQ QQGHDHINEQ KPLITFNNMV KIEEEPEKTN PDHPQHQNSI TNPFDVSVSQ LLLDPDYYLG
201: SGGGGEGDFA IMSSSTNSPL PNTSGDQNEH QQQEILQWFG SSNLQTEASS DMFLNNIGNL ETNEDTRFYS SLAGAGAAPA GGTTSTSADQ STISWEDITS
301: LVNSEDASYF NGPN
101: TDNDIKNYWN TRLKKKLLNK QRTEFQEARM KQEMVMMKRQ QQGHDHINEQ KPLITFNNMV KIEEEPEKTN PDHPQHQNSI TNPFDVSVSQ LLLDPDYYLG
201: SGGGGEGDFA IMSSSTNSPL PNTSGDQNEH QQQEILQWFG SSNLQTEASS DMFLNNIGNL ETNEDTRFYS SLAGAGAAPA GGTTSTSADQ STISWEDITS
301: LVNSEDASYF NGPN
001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE
Arabidopsis Description
MYB87Transcription factor MYB87 [Source:UniProtKB/Swiss-Prot;Acc:F4JSU0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.