CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023085.1-P	Field mustard	nucleus	96.19	96.19
CDY46743	Canola	nucleus	95.85	95.85
CDY33205	Canola	nucleus	86.85	87.15
CDX75005	Canola	nucleus	84.08	84.38
CDY08749	Canola	nucleus	13.15	74.51
AT2G36890.2	Thale cress	nucleus	86.16	73.45
CDY08162	Canola	nucleus	36.68	35.33
CDY18676	Canola	nucleus	37.72	34.71
CDY60980	Canola	nucleus	37.72	34.71
CDX69328	Canola	nucleus	35.99	34.1
CDY64987	Canola	nucleus	28.03	33.89
CDX88631	Canola	nucleus	38.41	33.53
CDY65680	Canola	nucleus	34.6	33.33
CDY25898	Canola	nucleus	37.37	33.33
CDY11860	Canola	nucleus	38.41	33.23
CDY09184	Canola	nucleus	37.02	32.52
CDY50326	Canola	nucleus	36.68	31.74
CDY45629	Canola	nucleus	39.79	31.25
CDY08748	Canola	nucleus	39.79	31.25
CDY26977	Canola	nucleus	36.68	31.18
CDY52538	Canola	nucleus	39.45	30.89
CDY37840	Canola	nucleus	38.75	30.19
CDY57424	Canola	nucleus	28.72	25.94
CDY17391	Canola	nucleus	28.72	25.94
CDX86430	Canola	nucleus	28.37	25.39
CDX85201	Canola	endoplasmic reticulum, vacuole	28.37	12.54
CDY40299	Canola	nucleus	2.42	3.5

Protein Annotations

EnsemblPlants:CDX79698	EnsemblPlantsGene:GSBRNA2T00132505001	Gene3D:1.10.10.60	GO:A0A078CX35	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	ProteinID:CDX79698	ProteinID:CDX79698.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE5B97	MapMan:15.5.2.1	:

Description

BnaC03g20340D

Coordinates

chrLK031818:+:1722870..1724268

Molecular Weight (calculated)

32943.0 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.792

Length

289 amino acids

Sequence
(BLAST)

001: MGRAPCCDKE NVKRGPWSPE EDAKLKDYIE KQGTGGNWIT LPRKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIC SLFASIGSRW SVIAAHLHGR
101: TDNDIKNYWN TKLKKKLMAT MAPPRNHHLS AIASSSSSSP SPSSHYNMIN SLLPYDPSMS TNQLITPHRG MMTMMGQQQQ LLYQEDMGSL VNSPNNNKFV
201: MSHQDDSQKQ STNKGIMLLS DVRSGSSTTR TVTRVKMEHH VYHHEGTERS MEGYGMDEIN HLISSSCTSS SNSLWFDESK REDKFMLYY

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.