Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08749 | Canola | nucleus | 18.58 | 82.35 |
| GSMUA_Achr5P09280_001 | Banana | nucleus | 45.58 | 53.65 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 44.69 | 48.79 |
| GSMUA_Achr4P01050_001 | Banana | nucleus | 45.58 | 45.58 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 53.98 | 43.42 |
| GSMUA_Achr1P03140_001 | Banana | nucleus | 48.23 | 42.91 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 48.23 | 42.58 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 52.21 | 42.29 |
| GSMUA_Achr9P09790_001 | Banana | nucleus | 48.67 | 41.83 |
| GSMUA_Achr10P... | Banana | nucleus | 49.56 | 41.79 |
| GSMUA_Achr1P04910_001 | Banana | nucleus | 44.25 | 41.15 |
| GSMUA_Achr11P... | Banana | nucleus | 46.46 | 40.23 |
| CDY08162 | Canola | nucleus | 50.44 | 38.0 |
| Bra017963.1-P | Field mustard | nucleus | 50.0 | 37.67 |
| CDY65680 | Canola | nucleus | 49.56 | 37.33 |
| AT3G49690.1 | Thale cress | nucleus | 50.88 | 37.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.69 | 37.0 |
| GSMUA_Achr8P24780_001 | Banana | nucleus | 49.56 | 36.48 |
| GSMUA_Achr5P22760_001 | Banana | nucleus | 50.88 | 36.39 |
| HORVU5Hr1G098540.1 | Barley | nucleus | 50.0 | 36.33 |
| TraesCS5D01G415800.1 | Wheat | nucleus | 49.56 | 36.01 |
| TraesCS5B01G410500.1 | Wheat | nucleus | 49.56 | 36.01 |
| TraesCS5A01G405800.1 | Wheat | nucleus | 49.56 | 36.01 |
| CDY18676 | Canola | nucleus | 50.0 | 35.99 |
| GSMUA_Achr5P10690_001 | Banana | nucleus | 44.25 | 35.84 |
| CDY60980 | Canola | nucleus | 49.56 | 35.67 |
| KRH28317 | Soybean | nucleus | 54.87 | 35.63 |
| Os03t0771100-01 | Rice | nucleus | 50.44 | 35.51 |
| GSMUA_Achr9P13610_001 | Banana | nucleus | 48.23 | 35.16 |
| KRH77168 | Soybean | nucleus | 53.98 | 35.16 |
| GSMUA_Achr4P25260_001 | Banana | nucleus | 43.36 | 35.13 |
| Zm00001d034207_P001 | Maize | nucleus | 48.67 | 35.03 |
| Bra037828.1-P | Field mustard | nucleus | 48.67 | 35.03 |
| GSMUA_Achr6P30830_001 | Banana | nucleus | 48.67 | 34.92 |
| Solyc04g077260.2.1 | Tomato | nucleus | 49.56 | 34.46 |
| PGSC0003DMT400012702 | Potato | nucleus | 50.0 | 34.35 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 50.88 | 34.33 |
| EER90818 | Sorghum | nucleus | 49.56 | 34.25 |
| GSMUA_Achr7P25060_001 | Banana | nucleus | 44.25 | 34.25 |
| GSMUA_Achr2P04200_001 | Banana | nucleus | 44.69 | 33.55 |
| GSMUA_Achr8P14190_001 | Banana | nucleus | 46.46 | 33.55 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 48.67 | 33.03 |
| Zm00001d013164_P002 | Maize | nucleus | 50.44 | 32.57 |
| GSMUA_Achr7P19530_001 | Banana | nucleus | 48.67 | 32.26 |
| CDY45629 | Canola | nucleus | 52.21 | 32.07 |
| Bra024419.1-P | Field mustard | nucleus | 52.21 | 32.07 |
| CDY08748 | Canola | nucleus | 52.21 | 32.07 |
| CDY52538 | Canola | nucleus | 51.33 | 31.44 |
| CDY37840 | Canola | nucleus | 51.33 | 31.27 |
| Bra031847.1-P | Field mustard | nucleus | 51.33 | 31.27 |
| AT5G65790.1 | Thale cress | nucleus | 50.88 | 30.75 |
| GSMUA_Achr3P10060_001 | Banana | nucleus | 37.17 | 26.25 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P28090_001 | EnsemblPlants:GSMUA_Achr4T28090_001 | EnsemblPlantsGene:GSMUA_Achr4G28090_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF654 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000294D6F0 | UniProt:M0SSS1 | MapMan:15.5.2.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G28090_001]
Coordinates
chr4:+:26633991..26634846
Molecular Weight (calculated)
25139.9 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.605
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPD EDAKLKSYIE HHGTGGNWIA LPHKIGLKRC GKSCRLRWLN YLRPNLKRGG FSEEEDDIIC RLFVSIGSRW SVIASQLPGR
101: TDNDVKNYWN TRLKKKLLGK HAKGAEAKGD DNGGITGSPQ QPAPIDHVRH ELDGRFYIDA ANHGSSSVMP STVPCLVSPW LQEDSGRQAL QCLNDLTTEL
201: DEILRFNSLM YSSMMEGCER DATASI
101: TDNDVKNYWN TRLKKKLLGK HAKGAEAKGD DNGGITGSPQ QPAPIDHVRH ELDGRFYIDA ANHGSSSVMP STVPCLVSPW LQEDSGRQAL QCLNDLTTEL
201: DEILRFNSLM YSSMMEGCER DATASI
001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
Arabidopsis Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.