Factsheet for Bra017963.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029289.1-P
Bra032056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49690.1	Bra032056.1-P	AT2G24860.1	21798944
AT3G49690.1	Bra029289.1-P	AT5G62090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08162	Canola	nucleus	99.67	99.67
AT3G49690.1	Thale cress	nucleus	83.0	80.32
Bra037828.1-P	Field mustard	nucleus	63.33	60.51
Bra031847.1-P	Field mustard	nucleus	70.67	57.14
Bra024419.1-P	Field mustard	nucleus	69.33	56.52
GSMUA_Achr4P28090_001	Banana	nucleus	37.67	50.0
GSMUA_Achr5P21840_001	Banana	nucleus	34.0	49.28
GSMUA_Achr10P...	Banana	nucleus	37.0	41.42
GSMUA_Achr7P08150_001	Banana	nucleus	34.67	40.62
GSMUA_Achr5P01930_001	Banana	nucleus	37.33	39.86
Bra005234.1-P	Field mustard	nucleus	36.33	37.85
KRH28317	Soybean	nucleus	43.67	37.64
KRH77168	Soybean	nucleus	43.33	37.46
Bra011785.1-P	Field mustard	nucleus	38.0	37.38
Bra023085.1-P	Field mustard	nucleus	36.0	37.37
Solyc04g077260.2.1	Tomato	nucleus	40.33	37.23
PGSC0003DMT400012702	Potato	nucleus	40.67	37.08
GSMUA_Achr4P32240_001	Banana	nucleus	34.33	36.92
Bra017218.1-P	Field mustard	nucleus	35.0	36.21
Bra020428.1-P	Field mustard	nucleus	38.67	34.94
Bra006811.1-P	Field mustard	nucleus	38.33	34.74
GSMUA_Achr6P31740_001	Banana	nucleus	38.67	34.63
GSMUA_Achr6P01850_001	Banana	nucleus	37.33	33.63
Bra002448.1-P	Field mustard	nucleus	34.33	30.84
Bra020228.1-P	Field mustard	nucleus	33.67	30.7
Bra002847.1-P	Field mustard	nucleus	28.0	26.25
Bra035604.1-P	Field mustard	nucleus	27.67	25.94
Bra025337.1-P	Field mustard	nucleus	26.67	24.77

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra017963	EnsemblPlants:Bra017963.1	EnsemblPlants:Bra017963.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008150	GO:GO:0009719	GO:GO:0009751
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DN76	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000253F1A1

Description

AT3G49690 (E=1e-101) RAX3, MYB84, ATMYB84 | MYB84 (MYB DOMAIN PROTEIN 84); DNA binding / transcription factor

Coordinates

chrA06:-:9119163..9120383

Molecular Weight (calculated)

34567.1 Da

IEP (calculated)

8.004

GRAVY (calculated)

-0.746

Length

300 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE TRGTGGNWIT LPHKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEDEESIIC NLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLIMK QRKDLQEACI EQQEMMVMMK RQQQQIQTSF MMRQDQTMFT WPPQQLPFLH HNDDQVPTLV MNSSGGQEDS KPEIIKNMVK
201: IEDQEPERTN AFDHLNISQL LLDPNNNYLG SGEGFSMNSI LSTNTNSPLR NTSISHQRFR NFHDEAVDLF LGETSTSADQ STIRWEDISS LVYSDSKKCC

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.