Factsheet for Bra020228.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09184	Canola	nucleus	100.0	100.0
Bra002448.1-P	Field mustard	nucleus	86.02	84.73
AT5G23000.1	Thale cress	nucleus	83.59	83.59
Bra005234.1-P	Field mustard	nucleus	32.22	36.81
Bra023085.1-P	Field mustard	nucleus	32.22	36.68
Bra017218.1-P	Field mustard	nucleus	31.31	35.52
Bra017963.1-P	Field mustard	nucleus	30.7	33.67
Bra006811.1-P	Field mustard	nucleus	33.43	33.23
Bra020428.1-P	Field mustard	nucleus	33.43	33.13
Bra011785.1-P	Field mustard	nucleus	28.88	31.15
Bra037828.1-P	Field mustard	nucleus	29.48	30.89
Bra031847.1-P	Field mustard	nucleus	31.91	28.3
Bra024419.1-P	Field mustard	nucleus	31.61	28.26
Bra002847.1-P	Field mustard	nucleus	25.53	26.25
Bra035604.1-P	Field mustard	nucleus	25.23	25.94
Bra025337.1-P	Field mustard	nucleus	25.23	25.7

Protein Annotations

EnsemblPlants:Bra020228.1	EnsemblPlants:Bra020228.1-P	EnsemblPlantsGene:Bra020228	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF928	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002543514	UniProt:M4DUN5	MapMan:15.5.2.1	:	:

Description

AT5G23000 (E=1e-138) RAX1, MYB37, ATMYB37 | MYB37 (MYB DOMAIN PROTEIN 37); DNA binding / transcription factor

Coordinates

chrA02:+:5678593..5679918

Molecular Weight (calculated)

36744.9 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.689

Length

329 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDSKLRGYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLMSS SSFSHSSSAM TSPFLNPNSQ DVKRPSTTIS PSSYNPYFEN PTKALISNID GFEADNHQIF PFVNPNYPQD ISLSESSNNN
201: ISGTSGFSLN HNMCGHYSNH NHFSSDVSGN RSEIIMKQEE IMMLMMIDNH IDQRTKGYNG DFTQGYYSNF INGHGDLKQM ISGTGTNSNI NMGGSGSESA
301: SSSSSISNLA ENKSSGSLLQ HKCLPYFYS

Best Arabidopsis Sequence Match ( AT5G23000.1 )
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS

Arabidopsis Description

RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.