Factsheet for GSMUA_Achr6P30830_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09280_001	Banana	nucleus	34.92	57.29
GSMUA_Achr5P21840_001	Banana	nucleus	34.29	52.17
GSMUA_Achr4P28090_001	Banana	nucleus	34.92	48.67
GSMUA_Achr1P03140_001	Banana	nucleus	36.83	45.67
GSMUA_Achr4P01050_001	Banana	nucleus	32.7	45.58
GSMUA_Achr11P...	Banana	nucleus	37.14	44.83
GSMUA_Achr1P04910_001	Banana	nucleus	34.29	44.44
GSMUA_Achr5P22760_001	Banana	nucleus	44.13	43.99
GSMUA_Achr9P09790_001	Banana	nucleus	36.19	43.35
GSMUA_Achr10P...	Banana	nucleus	36.83	43.28
GSMUA_Achr4P32240_001	Banana	nucleus	37.78	42.65
GSMUA_AchrUn_...	Banana	nucleus	36.83	42.49
GSMUA_Achr4P25260_001	Banana	nucleus	37.14	41.94
GSMUA_Achr9P13610_001	Banana	nucleus	40.95	41.61
GSMUA_Achr5P01930_001	Banana	nucleus	36.83	41.28
GSMUA_Achr8P24780_001	Banana	nucleus	40.0	41.04
GSMUA_Achr7P08150_001	Banana	nucleus	33.33	41.02
GSMUA_Achr6P01850_001	Banana	nucleus	42.86	40.54
GSMUA_Achr5P10690_001	Banana	nucleus	34.92	39.43
GSMUA_Achr2P04200_001	Banana	nucleus	36.83	38.54
GSMUA_Achr7P19530_001	Banana	nucleus	41.27	38.12
GSMUA_Achr7P25060_001	Banana	nucleus	34.92	37.67
GSMUA_Achr8P14190_001	Banana	nucleus	36.51	36.74
GSMUA_Achr6P31740_001	Banana	nucleus	39.05	36.72
GSMUA_Achr3P10060_001	Banana	nucleus	29.84	29.38

Protein Annotations

EnsemblPlants:GSMUA_Achr6P30830_001	EnsemblPlants:GSMUA_Achr6T30830_001	EnsemblPlantsGene:GSMUA_Achr6G30830_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002969C39	UniProt:M0TBM8	MapMan:15.5.2.1	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G30830_001]

Coordinates

chr6:+:30793406..30794812

Molecular Weight (calculated)

35302.8 Da

IEP (calculated)

6.823

GRAVY (calculated)

-0.583

Length

315 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKRGPWSPE EDATLKAYIE KHGTGGNWIA LPHKIGLKRC GKSCRLRWLN YLRPNIKHGG FSVEEDHIIC SLYSSIGSRW SIIAAQLPGR
101: TDNDIKNHWN TRLKKKLLGK PREPPQPRCL SVNQVSTEVA NAMSLQTHPQ TLSAPALERM QLRGCEDPFF YHHPLGDKLF EDQHTDTSTS TTPIDSSHRR
201: LLQVKQEIQI LLNQTVQENM DCSVPGCPPS DAGGLAESSF SDCNSLVAGL SDLHEIFHGK EPFLGLQEAN QSTESDCFKE MYREKERDGM SLWSSMASSL
301: HPDSVLQEYL LGYDL

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.