Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P22760_001 | Banana | nucleus | 61.56 | 59.81 |
| GSMUA_Achr7P19530_001 | Banana | nucleus | 64.17 | 57.77 |
| GSMUA_Achr5P09280_001 | Banana | nucleus | 34.2 | 54.69 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 34.85 | 51.69 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 36.48 | 49.56 |
| GSMUA_Achr4P01050_001 | Banana | nucleus | 33.88 | 46.02 |
| GSMUA_Achr1P04910_001 | Banana | nucleus | 33.88 | 42.8 |
| GSMUA_Achr9P09790_001 | Banana | nucleus | 36.16 | 42.21 |
| GSMUA_Achr1P03140_001 | Banana | nucleus | 34.85 | 42.13 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 37.13 | 40.86 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 43.97 | 40.54 |
| GSMUA_Achr10P... | Banana | nucleus | 35.18 | 40.3 |
| GSMUA_Achr11P... | Banana | nucleus | 34.2 | 40.23 |
| GSMUA_Achr6P30830_001 | Banana | nucleus | 41.04 | 40.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.5 | 39.93 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 36.48 | 39.86 |
| GSMUA_Achr9P13610_001 | Banana | nucleus | 40.07 | 39.68 |
| CDY11860 | Canola | nucleus | 42.67 | 39.22 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 32.57 | 39.06 |
| Bra006811.1-P | Field mustard | nucleus | 42.02 | 38.97 |
| CDX88631 | Canola | nucleus | 42.02 | 38.97 |
| CDY25898 | Canola | nucleus | 41.04 | 38.89 |
| Bra020428.1-P | Field mustard | nucleus | 42.02 | 38.86 |
| AT5G57620.1 | Thale cress | nucleus | 42.02 | 38.74 |
| GSMUA_Achr5P10690_001 | Banana | nucleus | 34.53 | 37.99 |
| GSMUA_Achr4P25260_001 | Banana | nucleus | 34.2 | 37.63 |
| GSMUA_Achr7P25060_001 | Banana | nucleus | 35.18 | 36.99 |
| VIT_11s0052g01490.t01 | Wine grape | nucleus | 43.97 | 36.99 |
| GSMUA_Achr2P04200_001 | Banana | nucleus | 35.5 | 36.21 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 37.78 | 34.63 |
| GSMUA_Achr8P14190_001 | Banana | nucleus | 34.53 | 33.87 |
| GSMUA_Achr3P10060_001 | Banana | nucleus | 30.62 | 29.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P24780_001 | EnsemblPlants:GSMUA_Achr8T24780_001 | EnsemblPlantsGene:GSMUA_Achr8G24780_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF654 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002953814 | UniProt:M0TTD1 | MapMan:15.5.2.1 | : | : |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G24780_001]
Coordinates
chr8:+:28831601..28833416
Molecular Weight (calculated)
34133.9 Da
IEP (calculated)
6.001
GRAVY (calculated)
-0.571
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA IVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPHKIGLKRC GKSCRLRWLN YLRPDIKRGG FTEEEDQRIC SLYISIGSRW SIIAAQLPGR
101: TDNDVKNYWN TKLQKKLFGK RKEPPLHLNH VPTLPASALE RMHLQGLLSS PFSFCSNPEP WPNHQPPGDR SILPSISTDS THQAGFQMRS GILKSESAST
201: RGEVERSALA FHSASTGGSL SVETSTSSFD AVTADLQADE LDDLLYCNHS SSFAGHQEHE LAGLDCCREV FREKESTDWW IVDGFEDEST MVSWDSASAL
301: GSQEYDV
101: TDNDVKNYWN TKLQKKLFGK RKEPPLHLNH VPTLPASALE RMHLQGLLSS PFSFCSNPEP WPNHQPPGDR SILPSISTDS THQAGFQMRS GILKSESAST
201: RGEVERSALA FHSASTGGSL SVETSTSSFD AVTADLQADE LDDLLYCNHS SSFAGHQEHE LAGLDCCREV FREKESTDWW IVDGFEDEST MVSWDSASAL
301: GSQEYDV
001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
Arabidopsis Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.