Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P09280_001 | Banana | nucleus | 36.56 | 53.12 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 35.48 | 47.83 |
| GSMUA_Achr1P03140_001 | Banana | nucleus | 42.65 | 46.85 |
| GSMUA_Achr5P10690_001 | Banana | nucleus | 45.88 | 45.88 |
| GSMUA_Achr11P... | Banana | nucleus | 40.86 | 43.68 |
| GSMUA_Achr4P01050_001 | Banana | nucleus | 35.13 | 43.36 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 35.13 | 43.36 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 37.99 | 41.41 |
| GSMUA_Achr1P04910_001 | Banana | nucleus | 35.48 | 40.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.78 | 40.66 |
| GSMUA_Achr8P14190_001 | Banana | nucleus | 45.16 | 40.26 |
| HORVU7Hr1G096190.1 | Barley | nucleus | 36.92 | 39.62 |
| TraesCS7B01G314200.1 | Wheat | nucleus | 37.28 | 39.25 |
| GSMUA_Achr2P04200_001 | Banana | nucleus | 42.29 | 39.2 |
| TraesCS7D01G407500.1 | Wheat | nucleus | 36.92 | 38.87 |
| VIT_06s0061g00470.t01 | Wine grape | nucleus | 43.73 | 38.49 |
| GSMUA_Achr9P09790_001 | Banana | nucleus | 36.2 | 38.4 |
| TraesCS7A01G414300.1 | Wheat | nucleus | 37.28 | 38.38 |
| Zm00001d005307_P001 | Maize | nucleus | 40.5 | 38.31 |
| GSMUA_Achr10P... | Banana | nucleus | 36.2 | 37.69 |
| GSMUA_Achr6P30830_001 | Banana | nucleus | 41.94 | 37.14 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 37.28 | 37.01 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 36.2 | 36.2 |
| GSMUA_Achr7P25060_001 | Banana | nucleus | 37.63 | 35.96 |
| GSMUA_Achr9P13610_001 | Banana | nucleus | 39.78 | 35.81 |
| KXG35154 | Sorghum | nucleus | 40.5 | 35.31 |
| GSMUA_Achr5P22760_001 | Banana | nucleus | 39.78 | 35.13 |
| VIT_08s0007g05030.t01 | Wine grape | nucleus | 43.01 | 35.09 |
| GSMUA_Achr8P24780_001 | Banana | nucleus | 37.63 | 34.2 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 40.14 | 33.63 |
| GSMUA_Achr7P19530_001 | Banana | nucleus | 39.07 | 31.96 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 38.35 | 31.94 |
| GSMUA_Achr3P10060_001 | Banana | nucleus | 32.97 | 28.75 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P25260_001 | EnsemblPlants:GSMUA_Achr4T25260_001 | EnsemblPlantsGene:GSMUA_Achr4G25260_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF654 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000296C32A | UniProt:M0SRY7 | MapMan:15.5.2.1 | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G25260_001]
Coordinates
chr4:+:24842318..24843443
Molecular Weight (calculated)
31166.5 Da
IEP (calculated)
7.413
GRAVY (calculated)
-0.777
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRTPCCEKA NVKRGPWSPE EDTKLKEFIE KYGIGGNWIS LPQKAGLKRC GKSCRLRWLN YLRPNIKHGE FSEEEDRIIC SLFTTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGI TNPSQRKPRQ QKQHHQNHQQ YCLPSPSPPL QGRSHTTTTT TTTDGFPFTT ATSGLLEVPY DQHQIKESSA MITLGNDQTC
201: SSSDGSCSTK AGYVGGGDHM DIDGYLYGAT ELEYSSEEIN QFLISILGCS NGGTNSNNLY LDYPTANAGR EELEDPLNY
101: TDNDIKNYWN TKLKKKLLGI TNPSQRKPRQ QKQHHQNHQQ YCLPSPSPPL QGRSHTTTTT TTTDGFPFTT ATSGLLEVPY DQHQIKESSA MITLGNDQTC
201: SSSDGSCSTK AGYVGGGDHM DIDGYLYGAT ELEYSSEEIN QFLISILGCS NGGTNSNNLY LDYPTANAGR EELEDPLNY
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
Arabidopsis Description
RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.