CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005307_P001	Maize	nucleus	63.12	68.47
TraesCS7D01G407500.1	Wheat	nucleus	40.31	48.68
TraesCS7B01G314200.1	Wheat	nucleus	40.31	48.68
HORVU7Hr1G096190.1	Barley	nucleus	39.38	48.46
TraesCS7A01G414300.1	Wheat	nucleus	40.0	47.23
GSMUA_Achr1P03140_001	Banana	nucleus	35.0	44.09
GSMUA_Achr5P10690_001	Banana	nucleus	35.62	40.86
GSMUA_Achr4P25260_001	Banana	nucleus	35.31	40.5
VIT_06s0061g00470.t01	Wine grape	nucleus	35.94	36.28
EES00143	Sorghum	nucleus	27.5	35.92
GSMUA_Achr8P14190_001	Banana	nucleus	34.38	35.14
EES18637	Sorghum	nucleus	30.94	34.26
OQU79721	Sorghum	nucleus	25.94	34.16
EES14801	Sorghum	nucleus	33.44	33.44
EER90818	Sorghum	nucleus	33.75	33.03
VIT_08s0007g05030.t01	Wine grape	nucleus	34.38	32.16
EES10507	Sorghum	nucleus	33.12	30.03
OQU87345	Sorghum	nucleus	30.31	29.13
EER98942	Sorghum	nucleus	31.88	27.64
EES05913	Sorghum	nucleus	33.75	26.8
OQU92760	Sorghum	nucleus	27.19	26.52
EES01384	Sorghum	nucleus	25.31	25.47
KXG38237	Sorghum	nucleus	20.0	25.0
EES12341	Sorghum	nucleus	27.19	23.45
OQU75617	Sorghum	nucleus	11.25	11.46

Protein Annotations

EnsemblPlants:KXG35154	EnsemblPlantsGene:SORBI_3002G139800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	ProteinID:KXG35154	ProteinID:KXG35154.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00081AB95B	UniProt:A0A1B6QB77	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr2:+:22340317..22342179

Molecular Weight (calculated)

34648.2 Da

IEP (calculated)

7.288

GRAVY (calculated)

-0.522

Length

320 amino acids

Sequence
(BLAST)

001: MGRAPCCDKL SVKKGPWSPE EDRKLKEYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN YLRPNIKHGD FSDDEDRIIC NLFTTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLMHS LQPYTTHNHH STTVPSAAAA VASPEAAPIM SLQHLSSHDY SHIYSSDGSY SSNNSMTSLL SAAAGSLGLL LNGEQQATTC
201: LDSGGGHGIY LQEPYATTIS SNVHGHGLSA ETFIFGGFQS QEDHHHHKVL LLSGSGAANN QLDEQYNFAA SCCYDDEKAP PLLSLTGGAD GAGGTTSSFF
301: YDSTYNEHTA TATTTRAGAQ

Best Arabidopsis Sequence Match ( AT5G65790.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV

Arabidopsis Description

ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.