CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038930_P001	Maize	nucleus	81.31	89.69
GSMUA_Achr5P09280_001	Banana	nucleus	34.6	52.08
EES00143	Sorghum	nucleus	38.41	45.31
OQU87345	Sorghum	nucleus	44.64	38.74
TraesCS1A01G379700.1	Wheat	nucleus	39.45	36.89
OQU79721	Sorghum	nucleus	30.8	36.63
TraesCS1D01G387100.1	Wheat	nucleus	38.75	36.36
TraesCS1B01G401700.1	Wheat	nucleus	38.75	35.9
EER90818	Sorghum	nucleus	38.06	33.64
EES14801	Sorghum	nucleus	35.64	32.19
EES01384	Sorghum	nucleus	34.6	31.45
KXG35154	Sorghum	nucleus	34.26	30.94
EER98942	Sorghum	nucleus	36.33	28.46
EES10507	Sorghum	nucleus	34.26	28.05
OQU92760	Sorghum	nucleus	31.49	27.74
EES05913	Sorghum	nucleus	38.06	27.3
KXG38237	Sorghum	nucleus	23.53	26.56
EES12341	Sorghum	nucleus	31.14	24.26
OQU75617	Sorghum	nucleus	13.84	12.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8074564	UniProt:C5YV34	EnsemblPlants:EES18637	ProteinID:EES18637
ProteinID:EES18637.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF694	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3009G224500	SUPFAM:SSF46689	UniParc:UPI0001A88DBB	RefSeq:XP_002440207.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:56657463..56659100

Molecular Weight (calculated)

30437.9 Da

IEP (calculated)

7.705

GRAVY (calculated)

-0.293

Length

289 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA SVKRGPWSPE EDEQLRSYVQ RNGIGGNWIA LPQKAGLNRC GKSCRLRWLN YLRPDIKHGG YTEEEDRIIW SLYSSIGSRW SIIASKLPGR
101: TDNDVKNYWN TKLKKKAMAM AAAAGLSASS SGGGAFAAAA APATPTPPAL SPASSSVTSS SGDVRFGAAY TEPQPQPQHP GGLIRFDAPR TELAPVPPAV
201: GAQLDGAWST PVAPALDGGD VFLPELIGGG EQLFPYGGDF FGGLLQDSRA LEQLSACYFP NMAEIWGATA AVAAPDGNCK PPGLCNTLT

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.