Factsheet for TraesCS1D01G387100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G379700.1	Wheat	nucleus	95.13	94.82
TraesCS1B01G401700.1	Wheat	nucleus	94.81	93.59
GSMUA_Achr5P09280_001	Banana	nucleus	31.49	50.52
TraesCS5D01G242200.1	Wheat	nucleus	29.55	48.15
Zm00001d038930_P001	Maize	nucleus	35.39	41.6
EES18637	Sorghum	nucleus	36.36	38.75
TraesCS3D01G265100.1	Wheat	nucleus	37.34	38.21
TraesCS4D01G360600.1	Wheat	nucleus	32.47	37.45
TraesCS7D01G407500.1	Wheat	nucleus	32.14	37.36
TraesCS3D01G286300.1	Wheat	nucleus	34.09	36.33
TraesCS3D01G109800.1	Wheat	nucleus	31.49	36.33
TraesCS1D01G252300.1	Wheat	nucleus	22.4	33.99
TraesCS5D01G225800.1	Wheat	nucleus	33.44	32.59
TraesCS5D01G415800.1	Wheat	nucleus	31.17	30.87
TraesCS6D01G327300.1	Wheat	nucleus	34.09	28.77
TraesCS2D01G068000.1	Wheat	nucleus	32.14	28.37
TraesCS4D01G192400.1	Wheat	nucleus	27.27	27.27
TraesCS2D01G331700.1	Wheat	nucleus	27.6	24.15
TraesCS1D01G204500.1	Wheat	nucleus	19.48	24.1

Protein Annotations

EnsemblPlants:TraesCS1D01G387100.1	EnsemblPlantsGene:TraesCS1D01G387100	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF694	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:459879618..459880642

Molecular Weight (calculated)

32875.2 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.293

Length

308 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA RVKRGPWSPE EDEQLRGYVR THGIGGNWIA LPHKAGLNRC GKSCRLRWLN YLRPDIRHGG YTEQEDRVIC SLYASIGSRW SIIASKLPGR
101: TDNDVKNYWN TKLKKKAMPM PLPMRGPHYH HHAGLGAFSA PATPSGPARS WSQCVPSSLQ PAALSPAASG SSSVDTSSSG GDMCFAAAGM YQPPHPMQGF
201: VHVDSSPQTV LAPMPLDVPA ATGIWASPMP AASDVGGVAL EDAFLADLGA YGDLLLGGFG GQLLQDNKAT AAMELPGACY FPNMAEMWAA DHAHVHAKPP
301: QGLCNTFT

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.