Factsheet for GSMUA_Achr5P09280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G264900.1	Wheat	nucleus	35.94	77.53
GSMUA_Achr4P01050_001	Banana	nucleus	55.73	47.35
GSMUA_Achr4P28090_001	Banana	nucleus	53.65	45.58
GSMUA_Achr5P21840_001	Banana	nucleus	47.4	43.96
GSMUA_Achr1P04910_001	Banana	nucleus	54.69	43.21
GSMUA_Achr1P03140_001	Banana	nucleus	55.73	42.13
GSMUA_Achr9P09790_001	Banana	nucleus	55.73	40.68
Zm00001d038930_P001	Maize	nucleus	52.6	38.55
GSMUA_Achr11P...	Banana	nucleus	52.08	38.31
GSMUA_AchrUn_...	Banana	nucleus	53.12	37.36
GSMUA_Achr10P...	Banana	nucleus	51.04	36.57
GSMUA_Achr4P25260_001	Banana	nucleus	53.12	36.56
GSMUA_Achr7P08150_001	Banana	nucleus	48.44	36.33
Os05t0553400-01	Rice	nucleus	54.17	35.99
GSMUA_Achr5P01930_001	Banana	nucleus	52.6	35.94
GSMUA_Achr5P10690_001	Banana	nucleus	51.04	35.13
GSMUA_Achr6P30830_001	Banana	nucleus	57.29	34.92
GSMUA_Achr2P04200_001	Banana	nucleus	54.69	34.88
GSMUA_Achr4P32240_001	Banana	nucleus	50.52	34.77
EES18637	Sorghum	nucleus	52.08	34.6
GSMUA_Achr7P25060_001	Banana	nucleus	52.08	34.25
GSMUA_Achr8P24780_001	Banana	nucleus	54.69	34.2
GSMUA_Achr5P22760_001	Banana	nucleus	55.73	33.86
GSMUA_Achr8P14190_001	Banana	nucleus	54.17	33.23
TraesCS3D01G265100.1	Wheat	nucleus	51.56	32.89
TraesCS3B01G298200.1	Wheat	nucleus	51.04	32.67
GSMUA_Achr9P13610_001	Banana	nucleus	52.6	32.58
Zm00001d011614_P001	Maize	nucleus	54.69	32.21
Zm00001d043837_P001	Maize	nucleus	53.12	31.88
GSMUA_Achr6P01850_001	Banana	nucleus	54.69	31.53
TraesCS1D01G387100.1	Wheat	nucleus	50.52	31.49
TraesCS1A01G379700.1	Wheat	nucleus	50.52	31.39
OQU87345	Sorghum	nucleus	54.17	31.23
TraesCS1B01G401700.1	Wheat	nucleus	50.0	30.77
GSMUA_Achr7P19530_001	Banana	nucleus	54.17	30.5
GSMUA_Achr6P31740_001	Banana	nucleus	52.08	29.85
GSMUA_Achr3P10060_001	Banana	nucleus	44.79	26.88
HORVU3Hr1G063460.4	Barley	nucleus	40.62	25.08
Os01t0685400-01	Rice	nucleus	18.75	15.38

Protein Annotations

EnsemblPlants:GSMUA_Achr5P09280_001	EnsemblPlants:GSMUA_Achr5T09280_001	EnsemblPlantsGene:GSMUA_Achr5G09280_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002968660	UniProt:M0SX07	MapMan:15.5.2.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G09280_001]

Coordinates

chr5:+:6729584..6731868

Molecular Weight (calculated)

21623.3 Da

IEP (calculated)

10.540

GRAVY (calculated)

-0.554

Length

192 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDATLKIYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN YLRPDIKHGA FTEEEDTIIC TLHNRIGSRW SIIASQMPGR
101: TDNDVKNYWN TKLKKKLMLR HANLSAPATS SGAMSARRTS ASPTRPSCGL LPRPMHRGCT KHLTIHCISR AGLCPPLYAF LDRDNNVFHR FL

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.