Factsheet for GSMUA_Achr2P04200_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	61.13	70.5
GSMUA_AchrUn_...	Banana	nucleus	63.12	69.6
GSMUA_Achr5P09280_001	Banana	nucleus	34.88	54.69
GSMUA_Achr1P03140_001	Banana	nucleus	40.53	48.03
GSMUA_Achr5P21840_001	Banana	nucleus	31.23	45.41
GSMUA_Achr4P28090_001	Banana	nucleus	33.55	44.69
GSMUA_Achr5P10690_001	Banana	nucleus	40.53	43.73
GSMUA_Achr4P01050_001	Banana	nucleus	32.56	43.36
GSMUA_Achr9P09790_001	Banana	nucleus	37.21	42.59
GSMUA_Achr4P25260_001	Banana	nucleus	39.2	42.29
GSMUA_Achr8P14190_001	Banana	nucleus	43.19	41.53
GSMUA_Achr10P...	Banana	nucleus	34.88	39.18
VIT_06s0061g00470.t01	Wine grape	nucleus	41.2	39.12
GSMUA_Achr7P08150_001	Banana	nucleus	33.22	39.06
GSMUA_Achr1P04910_001	Banana	nucleus	31.23	38.68
GSMUA_Achr4P32240_001	Banana	nucleus	35.22	37.99
GSMUA_Achr5P01930_001	Banana	nucleus	35.22	37.72
GSMUA_Achr6P30830_001	Banana	nucleus	38.54	36.83
GSMUA_Achr9P13610_001	Banana	nucleus	37.87	36.77
GSMUA_Achr5P22760_001	Banana	nucleus	37.87	36.08
GSMUA_Achr8P24780_001	Banana	nucleus	36.21	35.5
GSMUA_Achr7P25060_001	Banana	nucleus	34.22	35.27
VIT_08s0007g05030.t01	Wine grape	nucleus	39.87	35.09
GSMUA_Achr7P19530_001	Banana	nucleus	38.87	34.31
GSMUA_Achr6P01850_001	Banana	nucleus	37.87	34.23
GSMUA_Achr6P31740_001	Banana	nucleus	37.87	34.03
GSMUA_Achr3P10060_001	Banana	nucleus	30.9	29.06

Protein Annotations

EnsemblPlants:GSMUA_Achr2P04200_001	EnsemblPlants:GSMUA_Achr2T04200_001	EnsemblPlantsGene:GSMUA_Achr2G04200_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000296B0CA	UniProt:M0S511	MapMan:15.5.2.1	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G04200_001]

Coordinates

chr2:+:9661223..9662329

Molecular Weight (calculated)

33201.1 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.648

Length

301 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDKQLKEYME KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNIKHGD FSDEEDRIIC SLFANIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKRLMGL PTSHRKPHHQ QQKKHQLQEQ QQQQQQQFFP SSFAANAPFS SSAPDLEGIP ISHLLNSLVA HPTHQSGNLI VFGGDHHSCS
201: SSDGSSIQIG YGRDFNHGLY NGRENMGFES HLYGGLETEK LLLVGGGGGG CEASSIGYSF GEVKPTIACP TDACHGLYLD GRSGAATDTS FRNIASAMYH
301: C

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.