Factsheet for GSMUA_Achr8P14190_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09280_001	Banana	nucleus	33.23	54.17
GSMUA_Achr5P10690_001	Banana	nucleus	44.41	49.82
GSMUA_Achr1P03140_001	Banana	nucleus	40.26	49.61
GSMUA_Achr11P...	Banana	nucleus	39.3	47.13
GSMUA_Achr4P28090_001	Banana	nucleus	33.55	46.46
GSMUA_Achr4P01050_001	Banana	nucleus	32.91	45.58
GSMUA_AchrUn_...	Banana	nucleus	39.62	45.42
GSMUA_Achr4P25260_001	Banana	nucleus	40.26	45.16
GSMUA_Achr2P04200_001	Banana	nucleus	41.53	43.19
GSMUA_Achr5P21840_001	Banana	nucleus	28.43	43.0
HORVU7Hr1G096190.1	Barley	nucleus	34.5	41.54
TraesCS7A01G414300.1	Wheat	nucleus	35.78	41.33
GSMUA_Achr1P04910_001	Banana	nucleus	31.95	41.15
TraesCS7B01G314200.1	Wheat	nucleus	34.5	40.75
VIT_06s0061g00470.t01	Wine grape	nucleus	40.89	40.38
TraesCS7D01G407500.1	Wheat	nucleus	33.87	40.0
GSMUA_Achr9P09790_001	Banana	nucleus	33.55	39.92
GSMUA_Achr10P...	Banana	nucleus	33.87	39.55
GSMUA_Achr7P08150_001	Banana	nucleus	31.95	39.06
GSMUA_Achr4P32240_001	Banana	nucleus	34.19	38.35
VIT_08s0007g05030.t01	Wine grape	nucleus	41.53	38.01
Zm00001d005307_P001	Maize	nucleus	35.78	37.97
GSMUA_Achr5P01930_001	Banana	nucleus	33.87	37.72
GSMUA_Achr6P30830_001	Banana	nucleus	36.74	36.51
GSMUA_Achr9P13610_001	Banana	nucleus	36.1	36.45
GSMUA_Achr5P22760_001	Banana	nucleus	36.42	36.08
GSMUA_Achr7P25060_001	Banana	nucleus	32.59	34.93
GSMUA_Achr8P24780_001	Banana	nucleus	33.87	34.53
KXG35154	Sorghum	nucleus	35.14	34.38
GSMUA_Achr6P31740_001	Banana	nucleus	36.42	34.03
GSMUA_Achr6P01850_001	Banana	nucleus	36.1	33.93
GSMUA_Achr7P19530_001	Banana	nucleus	35.46	32.55
GSMUA_Achr3P10060_001	Banana	nucleus	30.03	29.38

Protein Annotations

EnsemblPlants:GSMUA_Achr8P14190_001	EnsemblPlants:GSMUA_Achr8T14190_001	EnsemblPlantsGene:GSMUA_Achr8G14190_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF687	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002951022	UniProt:M0TQC2	MapMan:15.5.2.1	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G14190_001]

Coordinates

chr8:+:10769823..10771297

Molecular Weight (calculated)

34566.6 Da

IEP (calculated)

7.702

GRAVY (calculated)

-0.616

Length

313 amino acids

Sequence
(BLAST)

001: MGRTPCCDKA NVKKGPWSPE EDTKLKEFIG KHGTGGNWIA LPQKAGLNRC GKSCRLRWLN YLRPNIKHGE FSEEEERIIC NLFANIGSRW SIIASHLPGR
101: TDNDIKNYWN TKLKKKFLGI VPSQKKQQHQ LQLQQQQQHH NLFSSLFSLS QGGCNTTAPD LELVAGLGEF PSLISQRIPG FASTSTSATA ASALLQVPYR
201: QPLQMMERSH TTMIAFGNSD PSCNSSGGSC TQISYGTELE YDCDVGRGFE GEQISIDNYA TYGGLEYNSR SLRPGGGGHV ETPLDYTYEE IKHLLSSNSS
301: GCNTINNDNP SLP

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.