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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G407500.1 Wheat nucleus 93.08 91.32
TraesCS7B01G314200.1 Wheat nucleus 92.31 90.57
TraesCS7A01G414300.1 Wheat nucleus 93.46 89.67
HORVU4Hr1G055640.1 Barley cytosol 7.31 44.19
GSMUA_Achr1P03140_001 Banana nucleus 41.92 42.91
Zm00001d005307_P001 Maize nucleus 47.69 42.03
GSMUA_Achr5P10690_001 Banana nucleus 42.31 39.43
KXG35154 Sorghum nucleus 48.46 39.38
HORVU4Hr1G087730.1 Barley nucleus 32.31 38.53
HORVU3Hr1G068550.1 Barley nucleus 31.92 38.07
GSMUA_Achr4P25260_001 Banana nucleus 39.62 36.92
VIT_06s0061g00470.t01 Wine grape nucleus 44.62 36.59
GSMUA_Achr8P14190_001 Banana nucleus 41.54 34.5
HORVU5Hr1G063410.1 Barley nucleus 38.46 33.22
HORVU5Hr1G098540.1 Barley nucleus 39.23 32.8
HORVU1Hr1G061220.1 Barley nucleus 39.62 32.49
HORVU3Hr1G019590.2 Barley nucleus 33.08 31.97
VIT_08s0007g05030.t01 Wine grape nucleus 41.92 31.87
HORVU2Hr1G010450.2 Barley nucleus 41.15 30.48
HORVU6Hr1G083250.1 Barley nucleus 41.15 29.48
HORVU4Hr1G055680.1 Barley nucleus 32.69 28.15
HORVU2Hr1G081720.2 Barley nucleus 31.92 26.6
HORVU1Hr1G051980.2 Barley nucleus 24.23 25.51
HORVU1Hr1G045090.1 Barley nucleus 26.92 23.33
HORVU3Hr1G063460.4 Barley nucleus 27.69 23.15
HORVU1Hr1G084170.4 Barley nucleus 20.0 16.15
Protein Annotations
EnsemblPlants:HORVU7Hr1G096190.1EnsemblPlantsGene:HORVU7Hr1G096190Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/MybPANTHER:PTHR10641
PANTHER:PTHR10641:SF654PFAM:PF00249PFscan:PS51294SEG:segSMART:SM00717SUPFAM:SSF46689
UniParc:UPI0002952423UniProt:M0W671MapMan:15.5.2.1:::
Description
No Description!
Coordinates
chrchr7H:-:586568677..586569887
Molecular Weight (calculated)
28597.8 Da
IEP (calculated)
7.357
GRAVY (calculated)
-0.511
Length
260 amino acids
Sequence
(BLAST)
001: MGRAPCCDKG SVKKGPWSPE EDMKLKDYIH THGTGGNWIA LPTKAGLKRC GKSCRLRWLN YLRPNIKHGD FSDEEDRVIC ALFAAIGSRW SIIAAQLPGR
101: TDNDVKNYWN TKLKKKQLHL LIAAAAHGQQ YSSRPPEPPF TLEHHHHTSP TSAASLGQLL MFGVGGGDQQ QQYMPSCSSV DMSNNTSAAA VGLQESLMFG
201: GLEFQQQEEH TNNLLSPPPA AFGNDIMTYE HHEMISPSGF FFYGDGAGAA ATQEGTRFLY
Best Arabidopsis Sequence Match ( AT5G23000.1 )
(BLAST)
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
Arabidopsis Description
RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.