Factsheet for Zm00001d005307_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018319_P001	Maize	nucleus	24.75	81.11
KXG35154	Sorghum	nucleus	68.47	63.12
TraesCS7D01G407500.1	Wheat	nucleus	43.39	48.3
TraesCS7B01G314200.1	Wheat	nucleus	43.39	48.3
HORVU7Hr1G096190.1	Barley	nucleus	42.03	47.69
TraesCS7A01G414300.1	Wheat	nucleus	43.39	47.23
GSMUA_Achr1P03140_001	Banana	nucleus	38.31	44.49
GSMUA_Achr4P25260_001	Banana	nucleus	38.31	40.5
Zm00001d038930_P001	Maize	nucleus	35.93	40.46
GSMUA_Achr5P10690_001	Banana	nucleus	37.97	40.14
Zm00001d034207_P001	Maize	nucleus	38.64	36.31
GSMUA_Achr8P14190_001	Banana	nucleus	37.97	35.78
VIT_06s0061g00470.t01	Wine grape	nucleus	37.63	35.02
Zm00001d039496_P001	Maize	nucleus	29.49	34.8
Zm00001d013164_P002	Maize	nucleus	39.32	33.14
VIT_08s0007g05030.t01	Wine grape	nucleus	38.31	33.04
Zm00001d050185_P002	Maize	nucleus	35.25	31.14
Zm00001d011739_P001	Maize	nucleus	30.51	31.03
Zm00001d043837_P001	Maize	nucleus	32.88	30.31
Zm00001d004126_P001	Maize	nucleus	36.61	30.0
Zm00001d011614_P001	Maize	nucleus	32.88	29.75
Zm00001d005784_P001	Maize	nucleus	33.9	28.9
Zm00001d052069_P001	Maize	nucleus	37.97	28.28
Zm00001d028777_P001	Maize	nucleus	30.51	28.21
Zm00001d020569_P001	Maize	nucleus	34.92	27.91
Zm00001d043611_P001	Maize	nucleus	29.49	27.53
Zm00001d013931_P001	Maize	nucleus	24.07	26.01
Zm00001d025664_P001	Maize	nucleus	29.15	24.16

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103647248	MapMan:15.5.2.1	UniProt:A0A1D6ELQ7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	ProteinID:ONM20816.1
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002219EDA	EnsemblPlantsGene:Zm00001d005307	EnsemblPlants:Zm00001d005307_P001	EnsemblPlants:Zm00001d005307_T001	SEG:seg

Description

MYB-transcription factor 113Transcription factor RAX2

Coordinates

chr2:-:168964648..168965706

Molecular Weight (calculated)

30944.1 Da

IEP (calculated)

7.474

GRAVY (calculated)

-0.295

Length

295 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA SVKKGPWSPE EDRKLKEYID ENGTGGNWIA LPHKAGLKRC GKSCRLRWLN YLRPNLKHGD FSDDEDRIIC SLFATIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLVHG LERYTAHSLS QRSSSTVSSS SSAAVAASPA EAAPIVPLQH LSSPHDYSHL IYSGGGGGYG ASSMSTSLLS AAAAAAAGSR
201: DREQQTLRTD APCLVDSGGG GGGHGIYFDE TCASAISGSS VVHGLGTGNF VFGGLQLLQA QALLLATSGA ANQLDEPYSF AASCCYGEEA AAADG

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.