Factsheet for Zm00001d039496_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00143	Sorghum	nucleus	86.0	87.76
TraesCS3D01G109800.1	Wheat	nucleus	71.6	67.04
Zm00001d018319_P001	Maize	nucleus	24.0	66.67
TraesCS3B01G126800.1	Wheat	nucleus	71.2	65.93
TraesCS3A01G108000.1	Wheat	nucleus	70.0	65.54
HORVU3Hr1G019590.2	Barley	nucleus	69.2	64.31
Os01t0191900-01	Rice	nucleus	66.4	62.88
Zm00001d038930_P001	Maize	nucleus	41.6	39.69
Zm00001d011739_P001	Maize	nucleus	39.2	33.79
Zm00001d043837_P001	Maize	nucleus	42.0	32.81
Zm00001d043611_P001	Maize	nucleus	40.4	31.96
Zm00001d011614_P001	Maize	nucleus	41.6	31.9
Zm00001d034207_P001	Maize	nucleus	40.0	31.85
Zm00001d050185_P002	Maize	nucleus	39.6	29.64
Zm00001d005307_P001	Maize	nucleus	34.8	29.49
Zm00001d028777_P001	Maize	nucleus	37.2	29.15
Zm00001d005784_P001	Maize	nucleus	38.4	27.75
Zm00001d013164_P002	Maize	nucleus	38.4	27.43
Zm00001d004126_P001	Maize	nucleus	39.2	27.22
Zm00001d020569_P001	Maize	nucleus	39.2	26.56
Zm00001d013931_P001	Maize	nucleus	27.2	24.91
Zm00001d052069_P001	Maize	nucleus	38.4	24.24
Zm00001d025664_P001	Maize	nucleus	33.6	23.6
CDY40299	Canola	nucleus	3.2	4.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:542611	UniProt:A0A1D6MHQ1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	ProteinID:ONM28964.1
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF607	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000221DC6E	EnsemblPlantsGene:Zm00001d039496	EnsemblPlants:Zm00001d039496_P001	EnsemblPlants:Zm00001d039496_T001	SEG:seg

Description

MYB-transcription factor 131R2R3MYB-domain protein

Coordinates

chr3:+:5913103..5914797

Molecular Weight (calculated)

26430.1 Da

IEP (calculated)

8.113

GRAVY (calculated)

-0.278

Length

250 amino acids

Sequence
(BLAST)

001: MGRTPCCDRA AVKRGPWSPE EDEALRSYVQ RHGSGGNWIT MPKKAGLKRC GKSCRLRWLN YLRPDIRHGG FTAEEDAVIM SLYAQLGSKW SLIASQMEGR
101: TDNDVKNHWN TKLKKRLLAA AAASSAPPPA PAPAPLSSTT LTSSLFPSLA IPTVKTEAYT CDDFLAPALG LGDPFAAAAA AADGSTSAAS AASSASNNWS
201: AAENGAGEAS LFLLDFCAGP DLAGADQLHL PGGYYYPLDP ILPSSPRRYS

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.