Factsheet for Zm00001d025664_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12341	Sorghum	nucleus	94.38	90.57
TraesCS2D01G331700.1	Wheat	nucleus	80.9	81.82
TraesCS2A01G331200.1	Wheat	nucleus	80.62	81.53
TraesCS2B01G351000.1	Wheat	nucleus	80.06	80.97
CDY64987	Canola	nucleus	45.79	68.2
VIT_19s0015g01280.t01	Wine grape	nucleus	59.55	64.24
HORVU2Hr1G081720.2	Barley	nucleus	54.78	62.5
KRG98401	Soybean	nucleus	55.9	61.04
KRH46482	Soybean	nucleus	55.06	60.31
PGSC0003DMT400022402	Potato	nucleus	53.93	58.54
Bra035604.1-P	Field mustard	nucleus	51.97	57.81
Zm00001d018319_P001	Maize	nucleus	14.61	57.78
CDY17391	Canola	nucleus	51.12	56.88
AT5G56110.1	Thale cress	nucleus	51.12	56.88
Solyc10g005760.1.1	Tomato	nucleus	53.65	56.85
Bra002847.1-P	Field mustard	nucleus	50.84	56.56
CDY57424	Canola	nucleus	50.28	55.94
Zm00001d039496_P001	Maize	nucleus	23.6	33.6
Zm00001d028777_P001	Maize	nucleus	29.78	33.23
Zm00001d038930_P001	Maize	nucleus	24.44	33.21
Zm00001d005307_P001	Maize	nucleus	24.16	29.15
Zm00001d011739_P001	Maize	nucleus	23.03	28.28
Zm00001d034207_P001	Maize	nucleus	24.44	27.71
Zm00001d011614_P001	Maize	nucleus	24.16	26.38
Zm00001d050185_P002	Maize	nucleus	24.72	26.35
Zm00001d043837_P001	Maize	nucleus	23.6	26.25
Zm00001d043611_P001	Maize	nucleus	22.75	25.63
Zm00001d013164_P002	Maize	nucleus	24.72	25.14
Zm00001d013931_P001	Maize	nucleus	18.26	23.81
Zm00001d005784_P001	Maize	nucleus	22.47	23.12
Zm00001d004126_P001	Maize	nucleus	23.31	23.06
Zm00001d020569_P001	Maize	nucleus	23.88	23.04
Zm00001d052069_P001	Maize	nucleus	24.72	22.22

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100279834	MapMan:15.5.2.1	MapMan:21.8.1.1	ProteinID:AQK44206.1	UniProt:B4FAV0
EMBL:BT034238	EMBL:BT039422	EMBL:BT040670	EMBL:BT043240	EMBL:BT054988	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043
GO:GO:0030154	GO:GO:0043565	GO:GO:0048658	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00017B6179	EnsemblPlantsGene:Zm00001d025664	EnsemblPlants:Zm00001d025664_P001	EnsemblPlants:Zm00001d025664_T001	SEG:seg

Description

MYB-transcription factor 84Transcription factor MYB80

Coordinates

chr10:-:125369798..125371471

Molecular Weight (calculated)

38436.3 Da

IEP (calculated)

5.963

GRAVY (calculated)

-0.561

Length

356 amino acids

Sequence
(BLAST)

001: MGRIPCCEKD SVKRGQWTPE EDNKLLSYIT QYGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGEF TDTEEQTIIK LHSVVGNRWS VIAAQLPGRT
101: DNDVKNHWNT KLKKKLSGMG IDPITHKSFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRPT DFPSPAVPDM SAIAGGSGVA APCGFPAPPQ
201: TDDTIERIKL GLSRAIMSEP AAPPGKQEQP WAPADLPEGL PGMYATYNPA SHGHEEFRYD NGTVPEYVLG GGGGADQGTS MWSHQSMYSG SSATEAAPRP
301: AEVLPEKGND SVGSSGGGEE ADDVKDGGKG GSDMSGLFGS DCVLWDLPDE LTNHMV

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.