Factsheet for AT5G56110.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64987	Canola	nucleus	70.31	94.14
Bra002847.1-P	Field mustard	nucleus	92.81	92.81
CDY17391	Canola	nucleus	92.81	92.81
CDY57424	Canola	nucleus	92.81	92.81
Bra035604.1-P	Field mustard	nucleus	92.19	92.19
VIT_19s0015g01280.t01	Wine grape	nucleus	61.25	59.39
KRH46482	Soybean	nucleus	59.06	58.15
KRG98401	Soybean	nucleus	59.06	57.98
PGSC0003DMT400022402	Potato	nucleus	56.56	55.18
Solyc10g005760.1.1	Tomato	nucleus	57.5	54.76
TraesCS2D01G331700.1	Wheat	nucleus	58.44	53.12
TraesCS2A01G331200.1	Wheat	nucleus	58.44	53.12
TraesCS2B01G351000.1	Wheat	nucleus	58.12	52.84
Zm00001d025664_P001	Maize	nucleus	56.88	51.12
EES12341	Sorghum	nucleus	58.12	50.13
HORVU2Hr1G081720.2	Barley	nucleus	48.44	49.68
AT3G28470.1	Thale cress	nucleus	33.75	34.07
AT4G37780.1	Thale cress	nucleus	27.5	28.85
AT3G49690.1	Thale cress	nucleus	26.25	27.1
AT5G57620.1	Thale cress	nucleus	26.88	25.83
AT5G23000.1	Thale cress	nucleus	25.94	25.23
AT2G36890.2	Thale cress	nucleus	26.25	24.78
AT5G65790.1	Thale cress	nucleus	27.19	23.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:21.8.1.1	EntrezGene:835710	UniProt:A0A178UM75	ProteinID:AAD40692.1
EMBL:AB493793	ProteinID:AED96722.1	ArrayExpress:AT5G56110	EnsemblPlantsGene:AT5G56110	RefSeq:AT5G56110	TAIR:AT5G56110
RefSeq:AT5G56110-TAIR-G	EnsemblPlants:AT5G56110.1	TAIR:AT5G56110.1	EMBL:AY519639	Unigene:At.50533	Symbol:AtMYB103
ProteinID:BAB09293.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010090
GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0048658	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_200422.1	ProteinID:OAO94938.1	PFAM:PF00249	PO:PO:0000282
PO:PO:0007611	PO:PO:0009046	PO:PO:0009071	PO:PO:0025022	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF653	UniProt:Q9XHV0	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000A3539
SEG:seg	:	:	:	:	:

Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]

Coordinates

chr5:+:22719191..22720664

Molecular Weight (calculated)

35985.5 Da

IEP (calculated)

7.322

GRAVY (calculated)

-0.728

Length

320 amino acids

Sequence
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.