CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025664_P001	Maize	nucleus	90.57	94.38
TraesCS2D01G331700.1	Wheat	nucleus	79.51	83.81
TraesCS2A01G331200.1	Wheat	nucleus	79.25	83.52
TraesCS2B01G351000.1	Wheat	nucleus	78.71	82.95
CDY64987	Canola	nucleus	44.47	69.04
VIT_19s0015g01280.t01	Wine grape	nucleus	57.95	65.15
HORVU2Hr1G081720.2	Barley	nucleus	52.02	61.86
KRG98401	Soybean	nucleus	53.91	61.35
KRH46482	Soybean	nucleus	53.37	60.92
Bra035604.1-P	Field mustard	nucleus	50.94	59.06
PGSC0003DMT400022402	Potato	nucleus	52.02	58.84
AT5G56110.1	Thale cress	nucleus	50.13	58.12
CDY17391	Canola	nucleus	50.13	58.12
Bra002847.1-P	Field mustard	nucleus	49.87	57.81
Solyc10g005760.1.1	Tomato	nucleus	52.29	57.74
CDY57424	Canola	nucleus	49.33	57.19
EES00143	Sorghum	nucleus	23.45	35.51
OQU92760	Sorghum	nucleus	29.65	33.54
EES18637	Sorghum	nucleus	24.26	31.14
OQU79721	Sorghum	nucleus	19.95	30.45
EER90818	Sorghum	nucleus	25.07	28.44
EES14801	Sorghum	nucleus	23.99	27.81
KXG35154	Sorghum	nucleus	23.45	27.19
KXG38237	Sorghum	nucleus	18.6	26.95
EES01384	Sorghum	nucleus	22.37	26.1
OQU87345	Sorghum	nucleus	22.64	25.23
EER98942	Sorghum	nucleus	23.45	23.58
EES10507	Sorghum	nucleus	22.1	23.23
EES05913	Sorghum	nucleus	24.53	22.58
OQU75617	Sorghum	nucleus	10.24	12.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:21.8.1.1	EntrezGene:8058687	UniProt:C5YAB3	EnsemblPlants:EES12341
ProteinID:EES12341	ProteinID:EES12341.1	GO:GO:0000003	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	GO:GO:0048658	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF653	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3006G115200
SUPFAM:SSF46689	UniParc:UPI0001A870A6	RefSeq:XP_002448013.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:48286059..48287896

Molecular Weight (calculated)

39452.4 Da

IEP (calculated)

5.806

GRAVY (calculated)

-0.537

Length

371 amino acids

Sequence
(BLAST)

001: MGRIPCCEKD SVKRGQWTPE EDNKLLSYIT QYGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGEF TDAEEQTIIK LHSVVGNRWS VIAAQLPGRT
101: DNDVKNHWNT KLKKKLSGMG IDPVTHKSFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRPT DFPSPAVPPD MATIAGGSGA GALGAPPCGF
201: PAPPQTDDTI ERIKLGLSRA IMSEPGAPPG KQQQPPWAPA DVTEGLAGMY ATYNPATHAQ EEFRYDNGAV PEYVLGGAGA GGDADQGTSM WSHQSMYSGS
301: SGTEAAPRPM AALPEKGNDS VGSSGGGGGG GGDEEADDVK DGGKGGSDMS GLFGSDCVLW DLPDELTNHM V

Best Arabidopsis Sequence Match ( AT5G56110.1 )
(BLAST)

001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV

Arabidopsis Description

MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.