CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020569_P001	Maize	nucleus	88.35	88.35
Zm00001d005784_P001	Maize	nucleus	82.38	87.86
TraesCS5B01G216900.1	Wheat	nucleus	55.01	66.12
HORVU5Hr1G063410.1	Barley	nucleus	53.93	66.11
TraesCS5A01G217900.1	Wheat	nucleus	55.28	66.02
TraesCS5D01G225800.1	Wheat	nucleus	55.28	64.56
Os09t0431300-00	Rice	nucleus	59.62	49.44
EES14801	Sorghum	nucleus	39.57	45.62
EES00143	Sorghum	nucleus	27.64	41.63
VIT_11s0052g01490.t01	Wine grape	nucleus	37.94	38.36
GSMUA_Achr7P19530_001	Banana	nucleus	34.42	37.24
EES18637	Sorghum	nucleus	28.46	36.33
Bra006811.1-P	Field mustard	nucleus	31.98	35.65
CDX88631	Canola	nucleus	31.98	35.65
CDY11860	Canola	nucleus	32.25	35.63
Bra020428.1-P	Field mustard	nucleus	31.98	35.54
CDY25898	Canola	nucleus	31.17	35.49
AT5G57620.1	Thale cress	nucleus	31.98	35.44
OQU79721	Sorghum	nucleus	22.76	34.57
EER90818	Sorghum	nucleus	30.62	34.56
EES05913	Sorghum	nucleus	37.4	34.24
EES10507	Sorghum	nucleus	31.44	32.86
OQU87345	Sorghum	nucleus	29.27	32.43
KXG35154	Sorghum	nucleus	27.64	31.88
EES01384	Sorghum	nucleus	25.2	29.25
KXG38237	Sorghum	nucleus	20.05	28.91
OQU92760	Sorghum	nucleus	24.39	27.44
EES12341	Sorghum	nucleus	23.58	23.45
OQU75617	Sorghum	nucleus	17.07	20.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8056007	UniProt:C5XD13	EnsemblPlants:EER98942	ProteinID:EER98942
ProteinID:EER98942.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF946	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3002G209300	SUPFAM:SSF46689	UniParc:UPI0001A840A2	RefSeq:XP_002462421.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:60117282..60118892

Molecular Weight (calculated)

39859.6 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.491

Length

369 amino acids

Sequence
(BLAST)

001: MGRAPCCNKA TVKKGPWAPE EDAVLKAYID EHGAGGNWIQ LPHKIGLNRC GKSCRLRWLN YLRPNIRHGG FTEEEDRLIC SLYISIGSRW ATIAAQLPGR
101: TDNDVKNHWN TKLKRRLLGG GRRPRAEARL QLLTNPTTWQ HHNSFASSAL ERMKVSMRLH RRHQDQARLD NPAAAAAAFT LYNYGSSLGA PLWPSLSSSS
201: SPSPAASESS EMLPRQPPGA GATSTGYSGG LWTHMPGSFG YTGAGVQENI DGTCTPPLST STGETMTAVG VESSSSTPTA SSASATFGSS MDDEIDMLLR
301: QIQCFGENNG HHIGDEVVTV DGIDHCFRAI MDHHEMANGN GSVGSWSSCC STPGVDSVFD DYVQGYNQC

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.