CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013931_P001	Maize	nucleus	79.3	74.36
TraesCS1A01G169400.1	Wheat	nucleus	62.11	54.08
HORVU1Hr1G045090.1	Barley	nucleus	60.94	52.0
HORVU1Hr1G051980.2	Barley	nucleus	49.61	51.42
TraesCS1D01G204500.1	Wheat	nucleus	49.61	51.0
TraesCS1A01G201100.1	Wheat	nucleus	51.56	50.57
TraesCS1B01G215500.1	Wheat	nucleus	50.0	49.42
GSMUA_Achr4P01050_001	Banana	nucleus	24.61	27.88
GSMUA_Achr1P04910_001	Banana	nucleus	26.17	27.57
VIT_04s0008g00620.t01	Wine grape	nucleus	26.17	25.38
EES00143	Sorghum	nucleus	23.83	24.9
OQU79721	Sorghum	nucleus	23.05	24.28
EES18637	Sorghum	nucleus	26.56	23.53
GSMUA_Achr7P25060_001	Banana	nucleus	26.17	22.95
EER90818	Sorghum	nucleus	29.3	22.94
EES14801	Sorghum	nucleus	28.52	22.81
KRH15488	Soybean	nucleus	26.56	22.52
KRH05529	Soybean	nucleus	26.17	21.68
EES01384	Sorghum	nucleus	25.39	20.44
EES10507	Sorghum	nucleus	28.12	20.4
EER98942	Sorghum	nucleus	28.91	20.05
KXG35154	Sorghum	nucleus	25.0	20.0
OQU87345	Sorghum	nucleus	25.78	19.82
EES05913	Sorghum	nucleus	29.3	18.61
EES12341	Sorghum	nucleus	26.95	18.6
OQU92760	Sorghum	nucleus	23.83	18.6
OQU75617	Sorghum	nucleus	13.28	10.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A1B6QJZ3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG38237	ProteinID:KXG38237	ProteinID:KXG38237.1
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF933	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3001G204400	SUPFAM:SSF46689	UniParc:UPI00081AC579	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:18658467..18659731

Molecular Weight (calculated)

27837.4 Da

IEP (calculated)

9.087

GRAVY (calculated)

-0.350

Length

256 amino acids

Sequence
(BLAST)

001: MIKKGKWSKE EDDLIINHIQ RHGSIGLRRC GRSCRSRWLN YLRPGLKHGN FTLAEERIIC EMYSKRGSCW SVIAAQLPGR TDLAIKNYWN STLKKKYLLP
101: AARTAATWGR GSRRTCPSGS TSSDAAGVPA RGLQLVVYSN EESSTAGSSS PSPSPVKPVL AGPTPAPVAA AGQEPIAAVP NSGPVVRIEQ KPALASRLPL
201: EKPLPREAGD QIGERLMDLV CAPASPIPLN FMEPELLACI DGFDDTDSFL PWFDHH

Best Arabidopsis Sequence Match ( AT4G37780.1 )
(BLAST)

001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE

Arabidopsis Description

MYB87Transcription factor MYB87 [Source:UniProtKB/Swiss-Prot;Acc:F4JSU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.