CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050185_P002	Maize	nucleus	79.06	75.75
TraesCS1D01G252300.1	Wheat	nucleus	45.0	70.94
Os08t0248700-01	Rice	nucleus	69.69	70.57
HORVU1Hr1G061220.1	Barley	nucleus	67.5	68.14
TraesCS1A01G252600.1	Wheat	nucleus	68.12	67.91
TraesCS1B01G265400.1	Wheat	nucleus	67.19	67.61
VIT_11s0052g01490.t01	Wine grape	nucleus	47.19	41.37
GSMUA_Achr7P19530_001	Banana	nucleus	43.75	41.06
EES00143	Sorghum	nucleus	30.62	40.0
EER98942	Sorghum	nucleus	45.62	39.57
CDY25898	Canola	nucleus	38.44	37.96
Bra020428.1-P	Field mustard	nucleus	39.38	37.95
Bra006811.1-P	Field mustard	nucleus	39.06	37.76
CDX88631	Canola	nucleus	39.06	37.76
CDY11860	Canola	nucleus	39.38	37.72
AT5G57620.1	Thale cress	nucleus	39.06	37.54
OQU79721	Sorghum	nucleus	27.81	36.63
EER90818	Sorghum	nucleus	37.19	36.39
EES05913	Sorghum	nucleus	45.0	35.73
EES18637	Sorghum	nucleus	32.19	35.64
OQU87345	Sorghum	nucleus	35.0	33.63
KXG35154	Sorghum	nucleus	33.44	33.44
EES10507	Sorghum	nucleus	36.25	32.86
EES01384	Sorghum	nucleus	29.69	29.87
OQU92760	Sorghum	nucleus	29.69	28.96
KXG38237	Sorghum	nucleus	22.81	28.52
EES12341	Sorghum	nucleus	27.81	23.99
OQU75617	Sorghum	nucleus	19.38	19.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8067939	UniProt:C5YJL7	EnsemblPlants:EES14801	ProteinID:EES14801
ProteinID:EES14801.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3007G092300	SUPFAM:SSF46689	UniParc:UPI0001A8781C	RefSeq:XP_002445306.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:15662344..15664134

Molecular Weight (calculated)

34758.5 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.563

Length

320 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA TVKKGPWSPE EDAMLKNYIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN YLRPNIKHGD FTPEEDSIIC SLYISIGSRW SIIAAQLPGR
101: TDNDVKNYWN TKLKKRLLGR RKDHHRQSAA DASTSTSTGE NMNDGEPAAL SASAMERIQL CMQLQNNHPL PLMWPGCGSR ASTQSNNSFN SNGSSVTMAE
201: QGQSSSSLNE QQHHLVMSAQ LEGAAGAIDN GLASPSSAEN SNMISMEAEL EELLYGADDN PQGNAAAAAA GMVDGGGVQQ VDVDWWSYDQ QAAGKSPVGC
301: WDFTPETNTV FLDYASVYDI

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.