Factsheet for VIT_04s0008g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P01050_001	Banana	nucleus	40.91	47.79
GSMUA_Achr1P04910_001	Banana	nucleus	40.15	43.62
KRH15488	Soybean	nucleus	48.11	42.05
KRH05529	Soybean	nucleus	48.48	41.42
VIT_11s0016g02780.t01	Wine grape	nucleus	43.56	40.35
GSMUA_Achr7P25060_001	Banana	nucleus	42.05	38.01
VIT_18s0001g08470.t01	Wine grape	nucleus	41.29	32.06
VIT_00s1352g00010.t01	Wine grape	nucleus	40.91	31.86
VIT_06s0061g00470.t01	Wine grape	nucleus	37.88	31.55
VIT_17s0000g05400.t01	Wine grape	nucleus	35.23	30.39
VIT_11s0052g01490.t01	Wine grape	nucleus	41.67	30.14
VIT_08s0007g05030.t01	Wine grape	nucleus	37.88	29.24
Zm00001d013931_P001	Maize	nucleus	27.65	26.74
HORVU1Hr1G051980.2	Barley	nucleus	25.0	26.72
KXG38237	Sorghum	nucleus	25.38	26.17
TraesCS1D01G204500.1	Wheat	nucleus	24.62	26.1
VIT_19s0015g01280.t01	Wine grape	nucleus	32.58	26.06
TraesCS1A01G201100.1	Wheat	nucleus	25.38	25.67
TraesCS1B01G215500.1	Wheat	nucleus	24.24	24.71
HORVU1Hr1G045090.1	Barley	nucleus	27.27	24.0
TraesCS1A01G169400.1	Wheat	nucleus	25.76	23.13
VIT_14s0066g02180.t01	Wine grape	nucleus	35.61	21.56

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100266257	wikigene:100266257	MapMan:15.5.2.1	ProteinID:CCB46538	ProteinID:CCB46538.1
UniProt:F6H382	EMBL:FN595231	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100266257	wikigene:LOC100266257	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF694	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001982F10	ArrayExpress:VIT_04s0008g00620
EnsemblPlantsGene:VIT_04s0008g00620	EnsemblPlants:VIT_04s0008g00620.t01	RefSeq:XP_002278546	RefSeq:XP_002278546.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:550884..552122

Molecular Weight (calculated)

28867.9 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.600

Length

264 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDATLRNYVQ THGIGGNWIA LPRKAGLRRC GKSCRLRWLN YLRPDIKHGG FTEEEDKVIC AIYNQMGSRW SVIASQLPGR
101: TDNDVKNYWN TKLKKKLAKF HSNGNAANNP NPFSSAPPPT AAPMPVTEAY RHGFPPLLTQ GYTGTSNNMG VSEFGASSNN GHNVFISDQG GLSTDHATGI
201: SYVSYLPGTR GGEDDGVLMD FGMGNLPYDI ISGFWFQEKD STEVTPGSAS LDEFPHLNIK PQGL

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.