Factsheet for VIT_00s1352g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g08470.t01	Wine grape	nucleus	53.98	53.82
VIT_11s0016g02780.t01	Wine grape	nucleus	34.51	41.05
VIT_04s0008g00620.t01	Wine grape	nucleus	31.86	40.91
VIT_11s0052g01490.t01	Wine grape	nucleus	41.3	38.36
VIT_06s0061g00470.t01	Wine grape	nucleus	35.4	37.85
VIT_08s0007g05030.t01	Wine grape	nucleus	34.22	33.92
VIT_17s0000g05400.t01	Wine grape	nucleus	25.96	28.76
VIT_19s0015g01280.t01	Wine grape	nucleus	26.25	26.97
VIT_14s0066g02180.t01	Wine grape	nucleus	25.66	19.95

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244588	wikigene:100244588	MapMan:15.5.2.1	ProteinID:CBI41089	ProteinID:CBI41089.3
ncoils:Coil	UniProt:D7UEC5	EMBL:FN596831	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100244588	wikigene:LOC100244588	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF891	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CDC93
ArrayExpress:VIT_00s1352g00010	EnsemblPlantsGene:VIT_00s1352g00010	EnsemblPlants:VIT_00s1352g00010.t01	unigene:Vvi.25945	RefSeq:XP_002266801	RefSeq:XP_002266801.2
RefSeq:XP_010647487.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:38747500..38748788

Molecular Weight (calculated)

37403.8 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.681

Length

339 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKTYIE KNGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SVIATQLPGR
101: TDNDIKNYWN TRLKKKLLGK QRKEQQARRA NYVKQEMKRE PGIFVVPDQA VGRNPYWAEL PAVSVHPNQD PDIKDQASIK KLLIKLGGRF GDDGQQPGSN
201: SINFQYPLDI STAQDGPYET SMNMFASSTS TMNSINSTGS QLPNTHYDVN GSASNVLQGY NSLLNELVYG NPQQLDGSGS FYGIEDIANG STGTSSAESS
301: SWGDINSLVY PSIISNYGVG QQGPLQDSGF EELRYLGSQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.