Factsheet for VIT_14s0066g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g059200.1.1	Tomato	nucleus	36.24	60.08
KRG93460	Soybean	nucleus	45.41	57.39
PGSC0003DMT400022009	Potato	nucleus	36.7	54.61
VIT_17s0000g05400.t01	Wine grape	nucleus	37.84	53.92
KRH18536	Soybean	endoplasmic reticulum	46.33	53.87
AT3G28470.1	Thale cress	nucleus	38.99	53.63
Bra025337.1-P	Field mustard	nucleus	38.99	52.63
CDX86430	Canola	nucleus	38.99	52.63
Os03t0296000-00	Rice	nucleus	11.93	50.49
GSMUA_Achr3P10060_001	Banana	nucleus	33.26	45.31
HORVU4Hr1G055680.1	Barley	nucleus	28.9	41.72
TraesCS4B01G191200.1	Wheat	nucleus	29.36	41.56
Zm00001d028777_P001	Maize	nucleus	30.28	41.38
TraesCS4D01G192400.1	Wheat	nucleus	29.13	41.23
TraesCS4A01G113000.1	Wheat	nucleus	28.67	40.72
OQU92760	Sorghum	nucleus	29.82	39.63
VIT_04s0008g00620.t01	Wine grape	nucleus	21.56	35.61
VIT_19s0015g01280.t01	Wine grape	nucleus	26.61	35.15
VIT_11s0016g02780.t01	Wine grape	nucleus	21.79	33.33
VIT_06s0061g00470.t01	Wine grape	nucleus	20.41	28.08
VIT_18s0001g08470.t01	Wine grape	nucleus	20.41	26.18
VIT_08s0007g05030.t01	Wine grape	nucleus	20.18	25.73
VIT_00s1352g00010.t01	Wine grape	nucleus	19.95	25.66
CDX85201	Canola	endoplasmic reticulum, vacuole	38.07	25.38
VIT_11s0052g01490.t01	Wine grape	nucleus	20.87	24.93

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100249216	wikigene:100249216	MapMan:15.5.2.1	EMBL:AM469654	ProteinID:CAN74972
ProteinID:CAN74972.1	ProteinID:CCB58570	ProteinID:CCB58570.1	InterPro:DUF4666	UniProt:F6HV52	EMBL:FN596252
GO:GO:0000003	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
GO:GO:0048443	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100249216	wikigene:LOC100249216	InterPro:Myb_dom
PFAM:PF00249	PFAM:PF15697	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF716	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002109E9D	ArrayExpress:VIT_14s0066g02180	EnsemblPlantsGene:VIT_14s0066g02180	EnsemblPlants:VIT_14s0066g02180.t01
RefSeq:XP_002276072	RefSeq:XP_002276072.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:28398940..28401688

Molecular Weight (calculated)

48468.8 Da

IEP (calculated)

8.812

GRAVY (calculated)

-0.645

Length

436 amino acids

Sequence
(BLAST)

001: MVRPPCCDKL NVKRGLWTAE EDAKILAYVS KHGIGNWTLV PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF TPQEEDLIVN LHKAIGSRWS LIAKELPGRT
101: DNDVKNYWNT KLRKKLTKMG IDPVTHKPFS QILTDYGNIS GLPNTATRMG SFSRGLNNAS VSVSGLSYTN MNDLKPLVEQ FQVLNQETVQ PHFFSEVPSS
201: SSSSSSCSNV TQLSSPQSFP CQPSQAQFTP SSPFSWNDFL LGDPFLPTDL QQQEECDPRG TFSSTSPSLV TQNEFPYCKF NGLGYKDSNA FQYGATTGDD
301: MGNSHKASSS PASSFVESIL DRDSEMRAKL PELLGESFDY LIMNTLERSS VSFRRQGSSG RIWDNQFQAI GQKADVPQAA AMATRKRQEV TFQEMENQTP
401: RSRSGNSTPP PSNSRDKGQR CAFSAVFGRC IGTRTP

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.