Factsheet for VIT_18s0001g08470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1352g00010.t01	Wine grape	nucleus	53.82	53.98
KRH52158	Soybean	nucleus	52.06	49.86
KRH61462	Soybean	nucleus	51.18	49.71
KRH15479	Soybean	nucleus	47.94	44.78
KRG88657	Soybean	nucleus	48.53	44.72
VIT_04s0008g00620.t01	Wine grape	nucleus	32.06	41.29
VIT_11s0052g01490.t01	Wine grape	nucleus	42.35	39.45
VIT_11s0016g02780.t01	Wine grape	nucleus	32.06	38.25
KRH67733	Soybean	nucleus	35.29	37.27
KRG96025	Soybean	nucleus	35.88	36.97
VIT_06s0061g00470.t01	Wine grape	nucleus	33.82	36.28
VIT_08s0007g05030.t01	Wine grape	nucleus	35.0	34.8
VIT_17s0000g05400.t01	Wine grape	nucleus	25.29	28.1
VIT_19s0015g01280.t01	Wine grape	nucleus	26.47	27.27
VIT_14s0066g02180.t01	Wine grape	nucleus	26.18	20.41

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100853539	wikigene:100853539	MapMan:15.5.2.1	EMBL:AM428623	ProteinID:CAN62567
ProteinID:CAN62567.1	ProteinID:CBI19348	ProteinID:CBI19348.3	UniProt:E0CNX0	EMBL:FN595227	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100853539	wikigene:LOC100853539	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF928	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015C74E7	ArrayExpress:VIT_18s0001g08470	EnsemblPlantsGene:VIT_18s0001g08470	EnsemblPlants:VIT_18s0001g08470.t01	unigene:Vvi.21470
RefSeq:XP_003634426	RefSeq:XP_003634426.1	RefSeq:XP_019071830.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:6923814..6925125

Molecular Weight (calculated)

38399.2 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.813

Length

340 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SVIAAQLPGR
101: TDNDIKNYWN TRLKKKLLGK QRKEQQARRG SCPKQEMKRA SGNAMVSDNE NLNPYWPELP VPAPIPYPNE EPRFNDHSSI RRLLIRLGGR FSDDGQPLQN
201: GTNLQLPIDI SSVQQPFDHS VNFLSSSPMN ALNNPRSEFP NAEYNMEGGG LHMLQGQNSF LAELEEMACS NPQRLDGLEF LYAQDMANNK PGSTAYEQSL
301: SWGETSSLVY PPVASNYEGL QQQGVTQEHD FDELRYPTPR

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.