CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96025	Soybean	nucleus	91.93	89.7
KRH19894	Soybean	nucleus	52.48	55.41
KRH32503	Soybean	nucleus	53.42	53.75
KRH26521	Soybean	nucleus	48.14	45.59
KRH22841	Soybean	nucleus	47.52	45.0
KRH60169	Soybean	nucleus	31.37	40.73
KRH74186	Soybean	nucleus	31.99	39.46
KRH49024	Soybean	nucleus	31.37	38.85
KRH25089	Soybean	nucleus	37.27	38.1
KRH77168	Soybean	nucleus	40.37	37.46
KRH28317	Soybean	nucleus	40.37	37.36
KRH30589	Soybean	nucleus	37.58	36.78
KRH41459	Soybean	nucleus	22.05	35.86
KRH58168	Soybean	nucleus	37.27	35.82
KRH04372	Soybean	nucleus	37.58	35.69
VIT_18s0001g08470.t01	Wine grape	nucleus	37.27	35.29
KRH15488	Soybean	nucleus	32.3	34.44
KRH52158	Soybean	nucleus	37.58	34.08
KRH61462	Soybean	nucleus	36.96	34.0
KRH05529	Soybean	nucleus	32.3	33.66
KRH15479	Soybean	nucleus	37.89	33.52
KRG88657	Soybean	nucleus	37.27	32.52
KRH18986	Soybean	nucleus	35.09	31.22
KRH02902	Soybean	nucleus	35.09	30.96
KRH63439	Soybean	nucleus	22.05	26.69
KRG98401	Soybean	nucleus	25.47	25.15
KRH46482	Soybean	nucleus	25.16	24.92
KRG93460	Soybean	nucleus	26.4	24.64
KRH18536	Soybean	endoplasmic reticulum	26.4	22.67
KRH54481	Soybean	nucleus	21.12	20.61

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100301876	MapMan:15.5.2.1	EMBL:ACUP02002075	EnsemblPlantsGene:GLYMA_03G183900	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1JPQ1	InterPro:IPR017930	EnsemblPlants:KRH67733	ProteinID:KRH67733
ProteinID:KRH67733.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF687
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00023C12FE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:39582909..39585113

Molecular Weight (calculated)

35611.4 Da

IEP (calculated)

7.050

GRAVY (calculated)

-0.629

Length

322 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDETLKDYIE QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN YLRPNIKHGQ FSDAEDKIIC SLFASIGSRW SIIASQLPGR
101: TDNDIKNYWN TKLKKKMMAM NPSVLQRKPQ QITLLSILQS SASSFRDSNN ISYYHPHGSF SYSSSSLVSG NNSSANADSL FQAQESFMDP KCQFKDSSIF
201: VSGGEATATA TATSCSSSDG SCNNQISHVM EPAEFGDASF VGGANNHIYS GEEDDNNTQK LMMFSNAGGS VSGWTGKQNG LLWEQNPLDY GLEEIKQLIS
301: TNNSCNNFLF DDKKTQERVT YY

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.