CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32503	Soybean	nucleus	92.46	88.12
KRH67733	Soybean	nucleus	55.41	52.48
KRG96025	Soybean	nucleus	56.07	51.82
KRH26521	Soybean	nucleus	48.2	43.24
KRH22841	Soybean	nucleus	47.54	42.65
KRH60169	Soybean	nucleus	33.44	41.13
KRH25089	Soybean	nucleus	41.31	40.0
KRH74186	Soybean	nucleus	34.1	39.85
KRH49024	Soybean	nucleus	33.77	39.62
KRH41459	Soybean	nucleus	24.92	38.38
KRH30589	Soybean	nucleus	41.31	38.3
KRH15488	Soybean	nucleus	36.72	37.09
KRH04372	Soybean	nucleus	40.98	36.87
KRH28317	Soybean	nucleus	41.64	36.49
KRH77168	Soybean	nucleus	40.98	36.02
KRH05529	Soybean	nucleus	36.39	35.92
KRH58168	Soybean	nucleus	39.34	35.82
KRH15479	Soybean	nucleus	41.64	34.89
KRH52158	Soybean	nucleus	39.67	34.08
KRG88657	Soybean	nucleus	40.98	33.88
KRH61462	Soybean	nucleus	38.69	33.71
KRH18986	Soybean	nucleus	39.02	32.87
KRH02902	Soybean	nucleus	38.69	32.33
KRH63439	Soybean	nucleus	24.92	28.57
KRG93460	Soybean	nucleus	30.16	26.67
KRH46482	Soybean	nucleus	27.87	26.15
KRG98401	Soybean	nucleus	27.87	26.07
KRH18536	Soybean	endoplasmic reticulum	29.84	24.27
KRH54481	Soybean	nucleus	24.59	22.73

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100794828	MapMan:15.5.2.1	EMBL:ACUP02008212	EnsemblPlantsGene:GLYMA_13G141900	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1LZ65	InterPro:IPR017930	EnsemblPlants:KRH19894	ProteinID:KRH19894
ProteinID:KRH19894.1	ProteinID:KRH19895.1	EMBL:KT031266	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF687	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233ADC1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:25437471..25439814

Molecular Weight (calculated)

34186.0 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.710

Length

305 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDEKLREYIE KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN YLRPNLKHGE FSEDEDRIIC TLYASIGSRW SIIASQLPGR
101: TDNDIKNYWN TKLKKKMMGM NPSALKKPHQ VNLSPMLQNS TPSSSFKNNH NSYFQPHLPF TGSESISYSS LPSDNYSTFE SLQNYQVSSV FMETSCSSSS
201: DGSCNNNQIN HVKEAELGYV GDGTFGDQII GRLSYLNSGV EDQDTLKLVP SNAGRVSGVT DEETRLWGES PLEYGLEEIK QLISNSSCNN FMLDDSKTGE
301: MVMYY

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.