CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52158	Soybean	nucleus	90.57	89.3
KRH15479	Soybean	nucleus	65.43	62.91
KRG88657	Soybean	nucleus	66.0	62.6
VIT_18s0001g08470.t01	Wine grape	nucleus	49.71	51.18
KRH04372	Soybean	nucleus	41.14	42.48
KRH49024	Soybean	nucleus	31.43	42.31
KRH74186	Soybean	nucleus	31.43	42.15
KRH58168	Soybean	nucleus	40.29	42.09
KRH77168	Soybean	nucleus	41.14	41.5
KRH28317	Soybean	nucleus	41.14	41.38
KRH60169	Soybean	nucleus	28.0	39.52
KRH19894	Soybean	nucleus	33.71	38.69
KRH32503	Soybean	nucleus	34.29	37.5
KRG96025	Soybean	nucleus	35.14	37.27
KRH67733	Soybean	nucleus	34.0	36.96
KRH25089	Soybean	nucleus	33.14	36.83
KRH15488	Soybean	nucleus	31.71	36.76
KRH26521	Soybean	nucleus	35.43	36.47
KRH02902	Soybean	nucleus	38.0	36.44
KRH05529	Soybean	nucleus	31.71	35.92
KRH18986	Soybean	nucleus	37.14	35.91
KRH22841	Soybean	nucleus	34.57	35.59
KRH41459	Soybean	nucleus	20.0	35.35
KRH30589	Soybean	nucleus	32.29	34.35
KRH46482	Soybean	nucleus	26.29	28.31
KRH63439	Soybean	nucleus	21.43	28.2
KRG98401	Soybean	nucleus	26.0	27.91
KRG93460	Soybean	nucleus	24.0	24.35
KRH54481	Soybean	nucleus	21.71	23.03
KRH18536	Soybean	endoplasmic reticulum	24.0	22.4

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100790407	MapMan:15.5.2.1	EMBL:ACUP02002168	EnsemblPlantsGene:GLYMA_04G048900	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1JTU0	InterPro:IPR017930	EnsemblPlants:KRH61462	ProteinID:KRH61462
ProteinID:KRH61462.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF928
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002339685	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:3961678..3963797

Molecular Weight (calculated)

39073.1 Da

IEP (calculated)

7.621

GRAVY (calculated)

-0.574

Length

350 amino acids

Sequence
(BLAST)

001: MGRAPCCDKS NVKKGPWSPD EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC SLYVCIGSRW SVIAAQLPGR
101: TDNDIKNYWN TRLKKKLLGK RRKELQARNK GNGVVEHENN SSLLLQENSA QQLHPCWPQI PAVLPLSPYT NQSPSFNDQD SIRKLLIKLG GRFSDDYQRI
201: LDGLNLQFPH GSLSSTQLLQ EEQVHFVSSA GCMNSIGNNQ VQFGQSNEYR AELVQGQSSF TTTTIGEMVS ANDYSQRLLG GSLEFFYGEE MITDKIMGGA
301: CASSSCGQST DWGETSSLIY PPLVASNYEG VRQEMPRECV FQELSYPGAQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.