CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15479	Soybean	nucleus	88.89	90.11
KRH52158	Soybean	nucleus	65.58	68.17
KRH61462	Soybean	nucleus	62.6	66.0
VIT_18s0001g08470.t01	Wine grape	nucleus	44.72	48.53
KRH77168	Soybean	nucleus	40.11	42.65
KRH28317	Soybean	nucleus	39.57	41.95
KRH04372	Soybean	nucleus	38.48	41.89
KRH49024	Soybean	nucleus	29.27	41.54
KRH58168	Soybean	nucleus	37.67	41.49
KRH74186	Soybean	nucleus	29.0	41.0
KRH19894	Soybean	nucleus	33.88	40.98
KRH60169	Soybean	nucleus	26.83	39.92
KRH32503	Soybean	nucleus	33.88	39.06
KRH25089	Soybean	nucleus	32.52	38.1
KRH67733	Soybean	nucleus	32.52	37.27
KRH15488	Soybean	nucleus	30.35	37.09
KRG96025	Soybean	nucleus	33.06	36.97
KRH18986	Soybean	nucleus	35.77	36.46
KRH05529	Soybean	nucleus	30.35	36.25
KRH26521	Soybean	nucleus	33.33	36.18
KRH02902	Soybean	nucleus	35.23	35.62
KRH30589	Soybean	nucleus	31.71	35.56
KRH22841	Soybean	nucleus	32.52	35.29
KRH41459	Soybean	nucleus	18.7	34.85
KRH63439	Soybean	nucleus	20.87	28.95
KRH46482	Soybean	nucleus	24.93	28.31
KRG98401	Soybean	nucleus	24.66	27.91
KRG93460	Soybean	nucleus	23.85	25.51
KRH18536	Soybean	endoplasmic reticulum	23.85	23.47
KRH54481	Soybean	nucleus	20.87	23.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100800290	MapMan:15.5.2.1	EnsemblPlantsGene:GLYMA_U038900	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7K0T6	EnsemblPlants:KRG88657	ProteinID:KRG88657	ProteinID:KRG88657.1
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233DE35	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chrscaffold_44:-:111908..114150

Molecular Weight (calculated)

41261.0 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.743

Length

369 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNLKHGG FSEEEDNIIC SLYVSIGSRW SVIAAQLPGR
101: TDNDIKNYWN TRLKKKLLGK HRREPRNRGN YNSVKQEIDV NRGSSNDGDS SSLSLLQENG NTTQQQQQPC WPQNINNMPV LPLQVPLPYT NQGPCFNDQD
201: SIKKLLIKLG GRFSGDYYHP TLDGLNLEFS SDGQQIYQEQ VHVGSSSAAA ACISSTINNN NEVQFAQTDQ YSGVHNLVQG QGGNFTPSFE EMVSSSNYPD
301: GLEFLYNEDM IDHRIIESPT TTVTATITTN WGETSTPLYH HHNSIASNYQ SQGVTQECAL QYFSYPGAQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.