CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61462	Soybean	nucleus	89.3	90.57
KRG88657	Soybean	nucleus	68.17	65.58
KRH15479	Soybean	nucleus	66.2	64.56
VIT_18s0001g08470.t01	Wine grape	nucleus	49.86	52.06
KRH04372	Soybean	nucleus	41.69	43.66
KRH58168	Soybean	nucleus	40.85	43.28
KRH77168	Soybean	nucleus	41.13	42.07
KRH28317	Soybean	nucleus	41.13	41.95
KRH49024	Soybean	nucleus	29.86	40.77
KRH74186	Soybean	nucleus	29.86	40.61
KRH19894	Soybean	nucleus	34.08	39.67
KRH60169	Soybean	nucleus	27.61	39.52
KRH32503	Soybean	nucleus	34.65	38.44
KRH67733	Soybean	nucleus	34.08	37.58
KRG96025	Soybean	nucleus	34.93	37.58
KRH25089	Soybean	nucleus	33.24	37.46
KRH15488	Soybean	nucleus	31.55	37.09
KRH26521	Soybean	nucleus	35.49	37.06
KRH05529	Soybean	nucleus	31.55	36.25
KRH22841	Soybean	nucleus	34.65	36.18
KRH02902	Soybean	nucleus	36.9	35.89
KRH18986	Soybean	nucleus	36.34	35.64
KRH30589	Soybean	nucleus	32.39	34.95
KRH41459	Soybean	nucleus	19.44	34.85
KRH46482	Soybean	nucleus	26.2	28.62
KRG98401	Soybean	nucleus	25.92	28.22
KRH63439	Soybean	nucleus	21.13	28.2
KRG93460	Soybean	nucleus	23.38	24.06
KRH54481	Soybean	nucleus	21.41	23.03
KRH18536	Soybean	endoplasmic reticulum	23.38	22.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:778079	UniProt:A0A0R4J3G3	EMBL:ACUP02003410	EnsemblPlantsGene:GLYMA_06G050000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
EnsemblPlants:KRH52158	ProteinID:KRH52158	ProteinID:KRH52158.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF928	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000189D94A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3785304..3787252

Molecular Weight (calculated)

39426.5 Da

IEP (calculated)

8.042

GRAVY (calculated)

-0.587

Length

355 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDTKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIRHGG FSEEEDNIIC SLYVSIGSRW SVIAAQLPGR
101: TDNDIKNYWN TRLKKKLLGK HRKELQARNK GNGGILKQEN SSSLLLQQNS AQQLHPCWPQ IPVLPLSSPY TNQSPSFNDQ DSIRKLLIKL GGRFSDDYQP
201: ILDGLNLQFP HGSNSLSSTQ QIQEEQVHVG SSALGCMNSI GHNQVQFGQS NEYCAELVQG QGSFITTAIG EMVSSNDYSR RLLGGSLEFF YGEEMITDNK
301: IMGACASSSC GQSTNWGETS SSLMYPSLVA SNYEGVRQEM PRECAFQELS YPGAQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.