CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22841	Soybean	nucleus	89.12	89.12
KRH19894	Soybean	nucleus	43.24	48.2
KRG96025	Soybean	nucleus	46.76	48.18
KRH67733	Soybean	nucleus	45.59	48.14
KRH32503	Soybean	nucleus	43.82	46.56
KRH25089	Soybean	nucleus	38.82	41.9
KRH60169	Soybean	nucleus	30.29	41.53
KRH49024	Soybean	nucleus	30.88	40.38
KRH30589	Soybean	nucleus	38.82	40.12
KRH74186	Soybean	nucleus	30.59	39.85
Zm00001d004126_P001	Maize	nucleus	39.71	37.5
KRH77168	Soybean	nucleus	38.24	37.46
KRH28317	Soybean	nucleus	37.94	37.07
KRH15488	Soybean	nucleus	32.65	36.76
KRH04372	Soybean	nucleus	36.47	36.58
KRH05529	Soybean	nucleus	33.24	36.57
KRH58168	Soybean	nucleus	35.88	36.42
KRH52158	Soybean	nucleus	37.06	35.49
KRH61462	Soybean	nucleus	36.47	35.43
KRH41459	Soybean	nucleus	20.59	35.35
TraesCS2A01G069300.1	Wheat	nucleus	36.18	35.34
TraesCS2B01G082400.1	Wheat	nucleus	36.18	35.04
TraesCS2D01G068000.1	Wheat	nucleus	35.88	34.96
HORVU2Hr1G010450.2	Barley	nucleus	35.88	34.76
KRH15479	Soybean	nucleus	36.47	34.07
KRG88657	Soybean	nucleus	36.18	33.33
KRH18986	Soybean	nucleus	34.12	32.04
KRH02902	Soybean	nucleus	33.53	31.23
KRH63439	Soybean	nucleus	22.06	28.2
KRG93460	Soybean	nucleus	27.94	27.54
KRH46482	Soybean	nucleus	25.59	26.77
KRG98401	Soybean	nucleus	25.29	26.38
KRH18536	Soybean	endoplasmic reticulum	27.65	25.07
KRH54481	Soybean	nucleus	21.18	21.82

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100796382	MapMan:15.5.2.1	EMBL:ACUP02007717	EnsemblPlantsGene:GLYMA_12G177700	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1LTM6	InterPro:IPR017930	EnsemblPlants:KRH26521	ProteinID:KRH26521
ProteinID:KRH26521.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF506
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233C415	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:33683365..33685393

Molecular Weight (calculated)

38702.8 Da

IEP (calculated)

7.444

GRAVY (calculated)

-0.809

Length

340 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDSKLKDYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKRKLMGL LPSSHQRIAP YQQFSSQNPS SFPSHSSLSS SQYRDYYYNS SHHYYIPAPT SSFTCLEPIS APSSNYTNTT TTSNSLSFYQ
201: HQEPLVSVSP RQYYPITDSS MLVFGSETSC SSSDGSCSQV SLGREIKQED MGFQNFMFGD HQNMNKFMNI NHDGGEEYVN QWTQRPNGYI FQTQQTALDY
301: DLEVIKNLIC SNSSSNSNNG YLSVDENKTE EKGVYYNYCN

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.