Factsheet for VIT_17s0000g05400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63439	Soybean	nucleus	38.89	44.74
Os03t0296000-00	Rice	nucleus	14.05	41.75
GSMUA_Achr3P10060_001	Banana	nucleus	43.46	41.56
TraesCS4D01G192400.1	Wheat	nucleus	40.85	40.58
TraesCS4A01G113000.1	Wheat	nucleus	40.52	40.39
TraesCS4B01G191200.1	Wheat	nucleus	40.52	40.26
HORVU4Hr1G055680.1	Barley	nucleus	39.22	39.74
KRH54481	Soybean	nucleus	41.5	38.48
Zm00001d028777_P001	Maize	nucleus	39.54	37.93
VIT_14s0066g02180.t01	Wine grape	nucleus	53.92	37.84
OQU92760	Sorghum	nucleus	39.22	36.59
VIT_04s0008g00620.t01	Wine grape	nucleus	30.39	35.23
Solyc03g113530.2.1	Tomato	nucleus	39.22	33.8
VIT_19s0015g01280.t01	Wine grape	nucleus	36.27	33.64
VIT_11s0016g02780.t01	Wine grape	nucleus	30.07	32.28
PGSC0003DMT400062839	Potato	nucleus	32.35	32.25
VIT_06s0061g00470.t01	Wine grape	nucleus	29.74	28.71
VIT_08s0007g05030.t01	Wine grape	nucleus	29.09	26.02
VIT_00s1352g00010.t01	Wine grape	nucleus	28.76	25.96
VIT_18s0001g08470.t01	Wine grape	nucleus	28.1	25.29
VIT_11s0052g01490.t01	Wine grape	nucleus	28.43	23.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ProteinID:CBI15301	ProteinID:CBI15301.3	UniProt:D7SIJ0	EMBL:FN594950
GO:GO:0000003	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
GO:GO:0048443	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF716	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BE0B9A
ArrayExpress:VIT_17s0000g05400	EnsemblPlantsGene:VIT_17s0000g05400	EnsemblPlants:VIT_17s0000g05400.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:5860757..5862296

Molecular Weight (calculated)

34267.5 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.555

Length

306 amino acids

Sequence
(BLAST)

001: MVRPPCCDKL NVKRGLWTAE EDAKILAHVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY LRPDLKHESF TPQEEELIVR LHATIGSRWS IIAQQLPGRT
101: DNDVKNYWNT KLRKKLSEMG IDPITHKPFS QILADYGNIG GLPKNGTRIG SLTRDLKNAL IHDNPSMNLL TQLKAIKLVT EASSCIHHGN ISSLSSPSSS
201: STCLTPKAKS LHTFSWSDFL LEDAFLSSDP QEQENMSKGN LDLQSEPNAD GQRQVDPIEE MTNTVLSNGA SEASSSYDSS FLEAMLDREN DMFLEFPSLL
301: EEPFYY

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.