Factsheet for Solyc03g113530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062839	Potato	nucleus	83.1	96.09
KRH63439	Soybean	nucleus	35.21	46.99
KRH54481	Soybean	nucleus	39.15	42.12
VIT_17s0000g05400.t01	Wine grape	nucleus	33.8	39.22
Solyc03g059200.1.1	Tomato	nucleus	27.89	37.64
GSMUA_Achr3P10060_001	Banana	nucleus	27.61	30.62
Solyc08g065910.1.1	Tomato	nucleus	18.31	30.52
TraesCS4D01G192400.1	Wheat	nucleus	25.92	29.87
TraesCS4B01G191200.1	Wheat	nucleus	25.92	29.87
TraesCS4A01G113000.1	Wheat	nucleus	25.63	29.64
HORVU4Hr1G055680.1	Barley	nucleus	23.94	28.15
Zm00001d028777_P001	Maize	nucleus	25.07	27.9
OQU92760	Sorghum	nucleus	25.35	27.44
Os03t0296000-00	Rice	nucleus	7.89	27.18
Solyc06g074910.2.1	Tomato	nucleus	21.97	25.83
Solyc09g008250.2.1	Tomato	nucleus	21.41	25.68
Solyc12g008670.1.1	Tomato	nucleus	20.28	25.53
Solyc02g091980.1.1	Tomato	nucleus	23.66	25.45
Solyc11g069030.1.1	Tomato	nucleus	21.41	24.13
Solyc10g005760.1.1	Tomato	nucleus	22.82	24.11
Solyc06g074920.1.1	Tomato	nucleus	20.0	24.07
Solyc04g077260.2.1	Tomato	nucleus	20.28	22.15
Solyc07g006750.2.1	Tomato	mitochondrion	21.41	17.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017877
InterPro:IPR017930	UniProt:K4BKK5	InterPro:Myb-like_dom	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS50090
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF716	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc03g113530.2	EnsemblPlants:Solyc03g113530.2.1	UniParc:UPI0002767C24	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:63645459..63647181

Molecular Weight (calculated)

39643.1 Da

IEP (calculated)

6.311

GRAVY (calculated)

-0.677

Length

355 amino acids

Sequence
(BLAST)

001: MGRPPCCNDK VHNRKCNWIE EDANTSTFVS INKHGIGNWA TMSKKSGHGR CGGRNQKQRW NNRLKPDLKQ DSFTPQEEEL IIKLHATIGS RWSIIAQQLA
101: GRTDNDVKNL WNTKLKKKLS AMGIDPVTHK PFSQILTDYG NIGGFPKART RFVSLNRELK GAFMSRPEQL QHSLQNFQNF NSLCVKLPKT EASEECFFSN
201: NQDSSNINQP PVDLFSELQA IKFVTEASNY NSPKAVFSHN PNPITDCSTS SPLSSSSSSS ASHSLADNQV NWCDYLLDDE FLPSNFKAQE DTLTIEEKLV
301: CGGAEDGSNN VPSTKDFENS LSTKGTSSSS FVEAMLECEN DMFLNFPGLS EDPFY

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.