Factsheet for VIT_06s0061g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03140_001	Banana	nucleus	38.17	47.64
HORVU7Hr1G096190.1	Barley	nucleus	36.59	44.62
TraesCS7D01G407500.1	Wheat	nucleus	36.91	44.15
TraesCS7B01G314200.1	Wheat	nucleus	36.91	44.15
GSMUA_Achr4P25260_001	Banana	nucleus	38.49	43.73
GSMUA_Achr11P...	Banana	nucleus	35.96	43.68
GSMUA_AchrUn_...	Banana	nucleus	37.54	43.59
GSMUA_Achr5P10690_001	Banana	nucleus	37.85	43.01
TraesCS7A01G414300.1	Wheat	nucleus	36.28	42.44
GSMUA_Achr2P04200_001	Banana	nucleus	39.12	41.2
GSMUA_Achr8P14190_001	Banana	nucleus	40.38	40.89
VIT_08s0007g05030.t01	Wine grape	nucleus	43.85	40.64
VIT_04s0008g00620.t01	Wine grape	nucleus	31.55	37.88
Zm00001d005307_P001	Maize	nucleus	35.02	37.63
VIT_11s0016g02780.t01	Wine grape	nucleus	32.49	36.14
KXG35154	Sorghum	nucleus	36.28	35.94
VIT_00s1352g00010.t01	Wine grape	nucleus	37.85	35.4
VIT_18s0001g08470.t01	Wine grape	nucleus	36.28	33.82
VIT_11s0052g01490.t01	Wine grape	nucleus	38.17	33.15
VIT_17s0000g05400.t01	Wine grape	nucleus	28.71	29.74
VIT_19s0015g01280.t01	Wine grape	nucleus	27.13	26.06
VIT_14s0066g02180.t01	Wine grape	nucleus	28.08	20.41

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250017	wikigene:100250017	MapMan:15.5.2.1	EMBL:AM449314	ProteinID:CAN72078
ProteinID:CAN72078.1	ProteinID:CCB44232	ProteinID:CCB44232.1	UniProt:F6GW97	EMBL:FN594957	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100250017	wikigene:LOC100250017	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF687	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0001983834	ArrayExpress:VIT_06s0061g00470	EnsemblPlantsGene:VIT_06s0061g00470	EnsemblPlants:VIT_06s0061g00470.t01	unigene:Vvi.21711
RefSeq:XP_002276209	RefSeq:XP_002276209.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:17935020..17936721

Molecular Weight (calculated)

35573.8 Da

IEP (calculated)

8.134

GRAVY (calculated)

-0.730

Length

317 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDSKLKAYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN YLRPNIKHGE FSDDEDRIIC TLFANMGSRW SVIATRLPGR
101: TDNDIKNYWN TKLKKKVMGM FSSSQRKLPP FPSVQNPPSP SISSSYYIPP STFPGHELPI PFPSTHLNNN TSPLTNVSLL QTQETFAGPG QYYPVKDNLF
201: MFASEASCSS SDGSGSQISF GRDIKQEEMG NFQSYIPTGF EENHKFMMGY GGSNGGHDHN VNHWPEKPNG CFGGSPLDQY NLDQEDVKQQ LISCSNGCTS
301: SFFIDENKTQ EKVMYYY

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.