Factsheet for PGSC0003DMT400022009

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g059200.1.1	Tomato	nucleus	83.96	93.54
Os03t0296000-00	Rice	nucleus	16.38	46.6
AT3G28470.1	Thale cress	nucleus	49.83	46.06
Bra025337.1-P	Field mustard	nucleus	50.51	45.82
CDX86430	Canola	nucleus	50.51	45.82
KRG93460	Soybean	nucleus	52.9	44.93
KRH18536	Soybean	endoplasmic reticulum	53.92	42.13
GSMUA_Achr3P10060_001	Banana	nucleus	43.0	39.38
TraesCS4B01G191200.1	Wheat	nucleus	41.3	39.29
TraesCS4A01G113000.1	Wheat	nucleus	40.96	39.09
TraesCS4D01G192400.1	Wheat	nucleus	40.96	38.96
Zm00001d028777_P001	Maize	nucleus	42.32	38.87
HORVU4Hr1G055680.1	Barley	nucleus	39.59	38.41
OQU92760	Sorghum	nucleus	41.98	37.5
VIT_14s0066g02180.t01	Wine grape	nucleus	54.61	36.7
PGSC0003DMT400022402	Potato	nucleus	36.86	32.93
PGSC0003DMT400009926	Potato	nucleus	32.42	31.67
PGSC0003DMT400005085	Potato	nucleus	32.42	31.67
PGSC0003DMT400000932	Potato	nucleus	30.03	30.45
PGSC0003DMT400035941	Potato	nucleus	18.77	30.05
PGSC0003DMT400055148	Potato	nucleus	32.76	29.09
PGSC0003DMT400012702	Potato	nucleus	30.72	27.36
PGSC0003DMT400048261	Potato	nucleus	31.74	25.27
PGSC0003DMT400062839	Potato	nucleus	25.94	24.76
CDX85201	Canola	endoplasmic reticulum, vacuole	49.49	22.17
PGSC0003DMT400020979	Potato	nucleus	14.33	21.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102578721	MapMan:15.5.2.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0048658	GO:GO:0052545
GO:GO:0055046	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1AG01	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400008532	PGSC:PGSC0003DMG400008532	EnsemblPlants:PGSC0003DMT400022009	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF716
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000294BE5B	RefSeq:XP_006342308.1	SEG:seg

Description

MYB transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008532]

Coordinates

chr3:-:18374336..18375366

Molecular Weight (calculated)

33243.1 Da

IEP (calculated)

7.274

GRAVY (calculated)

-0.594

Length

293 amino acids

Sequence
(BLAST)

001: MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY LRPDLKHDNF TPQEEDCILE LHKTIGSRWS LIAKQLPGRT
101: DNDVKNYWNT KLKKKLVNMG IDPVTHKPFA QVFAEYGKIS GLPIQNATNH IQFYNNTNQN NQLFIFSNET STPHHHLQQN YSTQIYTRET LQTLSFSEVS
201: STNSSFSSLQ SQLPSSSSTS TSTWNDFILG DPLTSSGTHQ TQGTFLSNQV EEMQPVEQPT CCPAMDSFVD TILARDKQML MDFPPFLDVY LHY

Best Arabidopsis Sequence Match ( AT3G28470.1 )
(BLAST)

001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY

Arabidopsis Description

MYB35Transcription factor MYB35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.