Factsheet for PGSC0003DMT400055148

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091980.1.1	Tomato	nucleus	96.97	96.97
GSMUA_Achr9P09790_001	Banana	nucleus	33.94	42.59
HORVU5Hr1G098540.1	Barley	nucleus	38.18	40.51
TraesCS5D01G415800.1	Wheat	nucleus	38.18	40.51
TraesCS5B01G410500.1	Wheat	nucleus	38.18	40.51
TraesCS5A01G405800.1	Wheat	nucleus	37.88	40.19
Os03t0771100-01	Rice	nucleus	38.79	39.88
PGSC0003DMT400012702	Potato	nucleus	38.48	38.6
Zm00001d034207_P001	Maize	nucleus	36.36	38.22
KRH04372	Soybean	nucleus	39.09	38.05
EER90818	Sorghum	nucleus	37.58	37.92
KRH58168	Soybean	nucleus	38.48	37.91
PGSC0003DMT400009926	Potato	nucleus	34.24	37.67
PGSC0003DMT400005085	Potato	nucleus	33.94	37.33
PGSC0003DMT400035941	Potato	nucleus	20.61	37.16
PGSC0003DMT400000932	Potato	nucleus	32.42	37.02
Zm00001d013164_P002	Maize	nucleus	38.48	36.29
PGSC0003DMT400048261	Potato	nucleus	37.58	33.7
PGSC0003DMT400022009	Potato	nucleus	29.09	32.76
PGSC0003DMT400022402	Potato	nucleus	27.27	27.44
PGSC0003DMT400020979	Potato	nucleus	14.55	24.12
PGSC0003DMT400062839	Potato	nucleus	18.79	20.2

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102583173	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1BXE9	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400021401	PGSC:PGSC0003DMG400021401	EnsemblPlants:PGSC0003DMT400055148	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295D8F9	RefSeq:XP_006363795.1	SEG:seg

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400021401]

Coordinates

chr2:+:42394491..42396025

Molecular Weight (calculated)

37679.1 Da

IEP (calculated)

7.519

GRAVY (calculated)

-0.712

Length

330 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDSKLKAYIE QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN YLRPNIKHGE FTDEEDNIIC TLYMSIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLLC NKQRKDHRPR TGSYINHNKL EMMKEHENFF ATHQTINNTY SWPSQQILFS TLIAPQNHDL AESSSANSHN FQYSTTDQVY
201: FSQDQLCQIS STNQLASMNL VNGNTCNSSV MISNGYYPSN GVVINNGLQE YNNYNSVGLD HDALNSTHSQ QVDKSVLEMV NSSTISTTSQ DQSTSWEELS
301: PLVNYPPSVF ETVSPYYVFE EQRYMGLLKQ

Best Arabidopsis Sequence Match ( AT3G49690.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF

Arabidopsis Description

RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.