Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G415800.1 | Wheat | nucleus | 98.71 | 98.71 |
| TraesCS5B01G410500.1 | Wheat | nucleus | 96.78 | 96.78 |
| HORVU5Hr1G098540.1 | Barley | nucleus | 95.18 | 95.18 |
| Os03t0771100-01 | Rice | nucleus | 81.99 | 79.44 |
| TraesCS3A01G264900.1 | Wheat | nucleus | 21.22 | 74.16 |
| EER90818 | Sorghum | nucleus | 74.92 | 71.25 |
| Zm00001d034207_P001 | Maize | nucleus | 70.74 | 70.06 |
| Zm00001d013164_P002 | Maize | nucleus | 73.95 | 65.71 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 36.01 | 49.56 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 32.48 | 48.79 |
| GSMUA_Achr10P... | Banana | nucleus | 41.16 | 47.76 |
| PGSC0003DMT400012702 | Potato | nucleus | 49.52 | 46.81 |
| Solyc04g077260.2.1 | Tomato | nucleus | 48.23 | 46.15 |
| GSMUA_Achr9P09790_001 | Banana | nucleus | 37.62 | 44.49 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 39.23 | 43.73 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 38.91 | 43.06 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 34.08 | 41.41 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 43.09 | 40.0 |
| Bra011785.1-P | Field mustard | nucleus | 38.59 | 39.34 |
| CDX69328 | Canola | nucleus | 38.26 | 39.02 |
| AT4G37780.1 | Thale cress | nucleus | 37.62 | 38.36 |
| KRH77168 | Soybean | nucleus | 42.77 | 38.33 |
| KRH28317 | Soybean | nucleus | 42.77 | 38.22 |
| Solyc02g091980.1.1 | Tomato | nucleus | 40.51 | 38.18 |
| TraesCS7A01G414300.1 | Wheat | nucleus | 33.12 | 38.01 |
| PGSC0003DMT400055148 | Potato | nucleus | 40.19 | 37.88 |
| KRH04372 | Soybean | nucleus | 39.87 | 36.58 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 38.59 | 36.04 |
| TraesCS3A01G108000.1 | Wheat | nucleus | 30.87 | 35.96 |
| KRH58168 | Soybean | nucleus | 38.59 | 35.82 |
| TraesCS1A01G252600.1 | Wheat | nucleus | 36.33 | 35.2 |
| TraesCS5A01G217900.1 | Wheat | nucleus | 34.73 | 34.95 |
| TraesCS6A01G344700.1 | Wheat | nucleus | 39.23 | 33.42 |
| TraesCS5A01G534400.1 | Wheat | nucleus | 28.62 | 33.21 |
| TraesCS3A01G286600.1 | Wheat | nucleus | 30.87 | 32.99 |
| TraesCS1A01G379700.1 | Wheat | nucleus | 31.51 | 31.72 |
| TraesCS2A01G069300.1 | Wheat | nucleus | 35.05 | 31.32 |
| TraesCS1A01G201100.1 | Wheat | nucleus | 24.76 | 29.5 |
| TraesCS4A01G113000.1 | Wheat | nucleus | 28.94 | 29.32 |
| TraesCS2A01G331200.1 | Wheat | nucleus | 29.26 | 25.85 |
| TraesCS1A01G169400.1 | Wheat | nucleus | 24.12 | 25.51 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G405800.1 | EnsemblPlantsGene:TraesCS5A01G405800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF928 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:597328550..597330293
Molecular Weight (calculated)
34270.7 Da
IEP (calculated)
8.154
GRAVY (calculated)
-0.517
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIRHGG FSDEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLFGK QSRKDQRQHQ FARQATNSGH KEEASEGAAG NNGFAAGAYN WHQHAMAMPS RPMPGSMVEG NRIGEGVDES IRKLLFKLGG
201: SSFAALQAPP CLPPPMYGEA PNFVAPSVHT APLNEGGIHC SGVLPALELD ESFQFNQVKL DGLECFFGMG DQSMRWNEVS HLVCPNTTVA SSSQGMQQYC
301: LAEEPVDLGM Q
101: TDNDIKNYWN TRLKKKLFGK QSRKDQRQHQ FARQATNSGH KEEASEGAAG NNGFAAGAYN WHQHAMAMPS RPMPGSMVEG NRIGEGVDES IRKLLFKLGG
201: SSFAALQAPP CLPPPMYGEA PNFVAPSVHT APLNEGGIHC SGVLPALELD ESFQFNQVKL DGLECFFGMG DQSMRWNEVS HLVCPNTTVA SSSQGMQQYC
301: LAEEPVDLGM Q
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
Arabidopsis Description
ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.