Factsheet for TraesCS5A01G534400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G360600.1	Wheat	nucleus	91.79	92.13
TraesCS4B01G366600.1	Wheat	nucleus	91.42	90.74
HORVU4Hr1G087730.1	Barley	nucleus	72.76	89.45
TraesCS3A01G264900.1	Wheat	nucleus	20.52	61.8
TraesCS3A01G286600.1	Wheat	nucleus	66.42	61.17
Os01t0722300-01	Rice	nucleus	58.21	52.35
Zm00001d011739_P001	Maize	nucleus	52.24	48.28
Zm00001d043611_P001	Maize	nucleus	56.72	48.1
EES01384	Sorghum	nucleus	56.72	47.8
TraesCS3A01G108000.1	Wheat	nucleus	33.96	34.08
TraesCS1A01G379700.1	Wheat	nucleus	37.31	32.36
TraesCS7A01G414300.1	Wheat	nucleus	31.34	31.0
TraesCS5A01G217900.1	Wheat	nucleus	33.58	29.13
TraesCS5A01G405800.1	Wheat	nucleus	33.21	28.62
TraesCS1A01G252600.1	Wheat	nucleus	33.21	27.73
TraesCS4A01G113000.1	Wheat	nucleus	31.72	27.69
TraesCS6A01G344700.1	Wheat	nucleus	33.21	24.38
TraesCS2A01G069300.1	Wheat	nucleus	31.34	24.14
TraesCS1A01G201100.1	Wheat	nucleus	22.76	23.37
TraesCS2A01G331200.1	Wheat	nucleus	29.48	22.44
TraesCS1A01G169400.1	Wheat	nucleus	23.88	21.77
CDY40299	Canola	nucleus	6.72	9.0

Protein Annotations

EnsemblPlants:TraesCS5A01G534400.1	EnsemblPlantsGene:TraesCS5A01G534400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930	InterPro:Myb-like_dom	InterPro:Myb_dom
InterPro:SANT/Myb	PANTHER:PTHR10641	PANTHER:PTHR10641:SF566	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	TIGR:cd00167	MapMan:15.5.2.1	:

Description

No Description!

Coordinates

chr5A:-:691676760..691678038

Molecular Weight (calculated)

29070.9 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.435

Length

268 amino acids

Sequence
(BLAST)

001: MVRSPCCDRR SVKRGAWSRE EDAILTGFVQ RFANAGNWMT LPHKAGLNRC GKSCRLRWLN YLRPALRHGQ FTDEEDSLIL SLYADIGSKW SVIAAKLPGR
101: TDNDVKNHWN TKLKKRHLLA MAPSPTPPTP ATDSPSASEA DESSLPPPPL DEEALATVDD GGELKHRSEE LYAELMGLIQ QQPMTGDVRS SSSSSLSSTP
201: TAGASSAGVS NAAWSVDDEE FLPESSGSSM VVDLHDPCAA HAFGATSFQD LLASSYDEII GTEGLLYY

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.