Factsheet for HORVU4Hr1G087730.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G360600.1	Wheat	nucleus	90.37	73.78
TraesCS5A01G534400.1	Wheat	nucleus	89.45	72.76
TraesCS4B01G366600.1	Wheat	nucleus	88.99	71.85
HORVU3Hr1G068550.1	Barley	nucleus	64.68	64.68
Os01t0722300-01	Rice	nucleus	63.3	46.31
Zm00001d011739_P001	Maize	nucleus	56.42	42.41
EES01384	Sorghum	nucleus	60.55	41.51
Zm00001d043611_P001	Maize	nucleus	60.09	41.46
HORVU4Hr1G055640.1	Barley	cytosol	7.34	37.21
HORVU3Hr1G019590.2	Barley	nucleus	40.83	33.09
HORVU7Hr1G096190.1	Barley	nucleus	38.53	32.31
HORVU5Hr1G063410.1	Barley	nucleus	39.45	28.57
HORVU5Hr1G098540.1	Barley	nucleus	38.99	27.33
HORVU1Hr1G061220.1	Barley	nucleus	38.07	26.18
HORVU4Hr1G055680.1	Barley	nucleus	34.86	25.17
HORVU1Hr1G051980.2	Barley	nucleus	27.52	24.29
HORVU2Hr1G010450.2	Barley	nucleus	38.53	23.93
HORVU2Hr1G081720.2	Barley	nucleus	33.03	23.08
HORVU6Hr1G083250.1	Barley	nucleus	37.61	22.59
HORVU1Hr1G045090.1	Barley	nucleus	29.36	21.33
HORVU3Hr1G063460.4	Barley	nucleus	28.44	19.94
HORVU1Hr1G084170.4	Barley	nucleus	22.02	14.91
CDY40299	Canola	nucleus	4.59	5.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A287Q0X0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	EnsemblPlantsGene:HORVU4Hr1G087730	EnsemblPlants:HORVU4Hr1G087730.1	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930
InterPro:Myb-like_dom	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF566	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B487AB5	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:638077420..638078681

Molecular Weight (calculated)

23908.0 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.566

Length

218 amino acids

Sequence
(BLAST)

001: MGRSPCCDRR SVKRGAWSRE EDAILTSFVQ RFANAGNWMT LPYKAGLNRC GKSCRLRWLN YLRPALRHGR FTDEEDSLIL SLYADIGSKW SAIAAKLPGR
101: TDNDVKNHWN TKLKKRHLLA MVPSTTPPTA AIDSPSASDA DESSLPPPLD EAAIATDDGE ELTRRSEELY AELMGLIQQQ PMTGDVRSSS SSLSSSRTAC
201: ASSAGGNSAA WPVDDKEF

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.