Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G405800.1 | Wheat | nucleus | 98.71 | 98.71 |
| TraesCS5B01G410500.1 | Wheat | nucleus | 97.43 | 97.43 |
| HORVU5Hr1G098540.1 | Barley | nucleus | 95.82 | 95.82 |
| Os03t0771100-01 | Rice | nucleus | 82.64 | 80.06 |
| EER90818 | Sorghum | nucleus | 75.56 | 71.87 |
| Zm00001d034207_P001 | Maize | nucleus | 71.38 | 70.7 |
| Zm00001d013164_P002 | Maize | nucleus | 74.28 | 66.0 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 36.01 | 49.56 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 31.83 | 47.83 |
| GSMUA_Achr10P... | Banana | nucleus | 41.16 | 47.76 |
| PGSC0003DMT400012702 | Potato | nucleus | 49.84 | 47.11 |
| Solyc04g077260.2.1 | Tomato | nucleus | 48.55 | 46.46 |
| GSMUA_Achr9P09790_001 | Banana | nucleus | 37.3 | 44.11 |
| TraesCS5D01G242200.1 | Wheat | nucleus | 26.69 | 43.92 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 39.55 | 43.77 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 39.23 | 43.73 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 34.08 | 41.41 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 43.09 | 40.0 |
| Bra011785.1-P | Field mustard | nucleus | 38.59 | 39.34 |
| CDX69328 | Canola | nucleus | 38.26 | 39.02 |
| TraesCS1D01G252300.1 | Wheat | nucleus | 25.4 | 38.92 |
| TraesCS7D01G407500.1 | Wheat | nucleus | 33.12 | 38.87 |
| Solyc02g091980.1.1 | Tomato | nucleus | 40.84 | 38.48 |
| AT4G37780.1 | Thale cress | nucleus | 37.62 | 38.36 |
| KRH77168 | Soybean | nucleus | 42.77 | 38.33 |
| KRH28317 | Soybean | nucleus | 42.77 | 38.22 |
| PGSC0003DMT400055148 | Potato | nucleus | 40.51 | 38.18 |
| KRH04372 | Soybean | nucleus | 39.87 | 36.58 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 38.59 | 36.04 |
| TraesCS3D01G109800.1 | Wheat | nucleus | 30.87 | 35.96 |
| KRH58168 | Soybean | nucleus | 38.59 | 35.82 |
| TraesCS5D01G225800.1 | Wheat | nucleus | 34.73 | 34.18 |
| TraesCS3D01G286300.1 | Wheat | nucleus | 31.51 | 33.91 |
| TraesCS3D01G265100.1 | Wheat | nucleus | 32.48 | 33.55 |
| TraesCS6D01G327300.1 | Wheat | nucleus | 39.23 | 33.42 |
| TraesCS4D01G360600.1 | Wheat | nucleus | 28.3 | 32.96 |
| TraesCS2D01G068000.1 | Wheat | nucleus | 35.37 | 31.52 |
| TraesCS1D01G387100.1 | Wheat | nucleus | 30.87 | 31.17 |
| TraesCS1D01G204500.1 | Wheat | nucleus | 24.12 | 30.12 |
| TraesCS4D01G192400.1 | Wheat | nucleus | 28.94 | 29.22 |
| TraesCS2D01G331700.1 | Wheat | nucleus | 29.9 | 26.42 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G415800.1 | EnsemblPlantsGene:TraesCS5D01G415800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF928 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:478221720..478222934
Molecular Weight (calculated)
34202.7 Da
IEP (calculated)
8.150
GRAVY (calculated)
-0.510
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIRHGG FSDEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLFGK QSRKDQRQHQ FARQAANGGH KEEASEGAAG NNGFAAGAYN WHQHAMAMPS RPMPGSMVEG NRIGEGVDES IRKLLFKLGG
201: SSFAALQAPP CLPPPMYGEA PNFVAPSMHT APLNEGGIHC SGVLPALELD ESFQFNQVKL DGLECFFGMG DQSMRWNEVS PLVCPNTTVA SSSQGMQQYC
301: LAEEPVDLGM Q
101: TDNDIKNYWN TRLKKKLFGK QSRKDQRQHQ FARQAANGGH KEEASEGAAG NNGFAAGAYN WHQHAMAMPS RPMPGSMVEG NRIGEGVDES IRKLLFKLGG
201: SSFAALQAPP CLPPPMYGEA PNFVAPSMHT APLNEGGIHC SGVLPALELD ESFQFNQVKL DGLECFFGMG DQSMRWNEVS PLVCPNTTVA SSSQGMQQYC
301: LAEEPVDLGM Q
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
Arabidopsis Description
RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.